Variant report

Variant	rs6874825
Chromosome Location	chr5:154157334-154157335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154155236..154157840-chr5:154218414..154220638,2	K562	blood:
2	chr5:154154220..154157426-chr5:154161456..154164339,3	MCF-7	breast:
3	chr5:154132476..154143251-chr5:154145354..154162500,38	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55747013	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72797565	0.82[EUR][1000 genomes]
rs72797568	0.87[EUR][1000 genomes]
rs72797577	0.91[EUR][1000 genomes]
rs72797582	0.91[EUR][1000 genomes]
rs72797590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv965536	chr5:154155200-154163441	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154147400-154161800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:154150200-154159400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:154151200-154162200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:154151200-154162800	Weak transcription	Primary B cells from cord blood	blood
5	chr5:154151400-154157800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:154151400-154158000	Weak transcription	HMEC	breast
7	chr5:154151400-154159400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:154151400-154159600	Weak transcription	Thymus	Thymus
9	chr5:154151400-154161600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:154151600-154158000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:154151600-154158200	Weak transcription	HUVEC	blood vessel
12	chr5:154151600-154161400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:154151600-154161800	Weak transcription	Fetal Lung	lung
14	chr5:154151600-154162200	Weak transcription	Fetal Brain Female	brain
15	chr5:154151600-154163000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:154151600-154163400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr5:154151600-154171200	Weak transcription	Fetal Brain Male	brain
18	chr5:154151800-154158000	Weak transcription	NHLF	lung
19	chr5:154151800-154158000	Weak transcription	Osteobl	bone
20	chr5:154151800-154161800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:154152600-154168200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr5:154152600-154168400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr5:154152800-154158000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:154153200-154158000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:154153400-154158200	Weak transcription	NH-A	brain
26	chr5:154153600-154157800	Weak transcription	NHEK	skin
27	chr5:154153600-154158000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr5:154153800-154157400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr5:154154000-154157800	Weak transcription	Liver	Liver
30	chr5:154154000-154159200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:154154000-154162000	Weak transcription	Esophagus	oesophagus
32	chr5:154154200-154158600	Weak transcription	Stomach Mucosa	stomach
33	chr5:154154200-154159400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr5:154154400-154158800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:154154400-154159400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr5:154154800-154158800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr5:154155200-154158000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:154155200-154158000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr5:154155200-154162200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr5:154155400-154158000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:154155400-154158000	Weak transcription	Fetal Intestine Small	intestine
42	chr5:154155400-154158000	Weak transcription	Right Ventricle	heart
43	chr5:154155400-154158800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:154155400-154158800	Weak transcription	Lung	lung
45	chr5:154155400-154159400	Weak transcription	Fetal Stomach	stomach
46	chr5:154155400-154161400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr5:154155400-154161400	Weak transcription	Brain Angular Gyrus	brain
48	chr5:154155600-154158200	Weak transcription	Gastric	stomach
49	chr5:154155600-154158600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr5:154155600-154159600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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