Variant report

Variant	rs72797565
Chromosome Location	chr5:154064656-154064657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:154059219..154066449-chr5:154131053..154139153,28	MCF-7	breast:
2	chr5:154061087..154064928-chr5:154133720..154137511,10	MCF-7	breast:
3	chr5:154062083..154065077-chr5:154078214..154080372,2	K562	blood:
4	chr5:154053688..154055424-chr5:154062643..154064722,2	K562	blood:
5	chr5:154059571..154067369-chr5:154132796..154138140,13	K562	blood:
6	chr5:154062816..154065132-chr5:154065984..154069776,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LARP1-2	chr5:154062216-154065204	NONHSAT104706

No data

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60227374	0.83[AMR][1000 genomes]
rs67047765	0.83[AMR][1000 genomes]
rs6874825	0.82[EUR][1000 genomes]
rs72797568	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72797577	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72797582	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72797590	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462491	chr5:154045280-154066205	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv600090	chr5:154045280-154066205	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154060800-154070000	Weak transcription	Gastric	stomach
2	chr5:154063000-154065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154063000-154069600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:154063200-154065000	Weak transcription	Fetal Intestine Small	intestine
5	chr5:154063200-154065200	Enhancers	Pancreas	Pancrea
6	chr5:154063400-154064800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:154063400-154065800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:154063600-154065600	Weak transcription	A549	lung
9	chr5:154063600-154065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:154063600-154066200	Enhancers	Liver	Liver
11	chr5:154063600-154066200	Weak transcription	Colonic Mucosa	Colon
12	chr5:154063600-154067200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr5:154063600-154069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:154063800-154065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:154063800-154066000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr5:154063800-154071200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:154064000-154065400	Enhancers	Left Ventricle	heart
18	chr5:154064200-154064800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:154064200-154065800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:154064400-154066600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr5:154064400-154067600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:154064400-154071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:154064400-154071000	Weak transcription	Psoas Muscle	Psoas
24	chr5:154064600-154065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr5:154064600-154070800	Weak transcription	Right Atrium	heart
26	chr5:154064600-154070800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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