Variant report

Variant	rs60227374
Chromosome Location	chr5:154008727-154008728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs67047765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72797545	0.92[EUR][1000 genomes]
rs72797565	0.83[AMR][1000 genomes]
rs72797568	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401644	chr5:153898681-154058368	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154006000-154010800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:154006400-154009400	Enhancers	Placenta	Placenta
3	chr5:154006600-154010800	Enhancers	Adipose Nuclei	Adipose
4	chr5:154007800-154008800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:154007800-154009800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:154008600-154009200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:154008600-154009800	Weak transcription	Fetal Lung	lung
8	chr5:154008600-154009800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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