Variant report

Variant	rs72797568
Chromosome Location	chr5:154068402-154068403
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154062816..154065132-chr5:154065984..154069776,3	MCF-7	breast:

rs_ID	r²[population]
rs60227374	0.83[AMR][1000 genomes]
rs67047765	0.83[AMR][1000 genomes]
rs6874825	0.87[EUR][1000 genomes]
rs72797565	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72797577	0.96[EUR][1000 genomes]
rs72797582	0.96[EUR][1000 genomes]
rs72797590	0.87[EUR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154060800-154070000	Weak transcription	Gastric	stomach
2	chr5:154063000-154069600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:154063600-154069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:154063800-154071200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:154064400-154071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:154064400-154071000	Weak transcription	Psoas Muscle	Psoas
7	chr5:154064600-154070800	Weak transcription	Right Atrium	heart
8	chr5:154064600-154070800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:154065200-154070800	Weak transcription	Pancreas	Pancrea
10	chr5:154065200-154070800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:154066000-154069400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:154066000-154070200	Weak transcription	Left Ventricle	heart
13	chr5:154066400-154071800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:154066600-154069600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:154066600-154070600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:154066600-154070800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:154066600-154070800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:154066600-154071000	Weak transcription	Colonic Mucosa	Colon
19	chr5:154066600-154071000	Weak transcription	NHLF	lung
20	chr5:154066800-154069600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:154066800-154070800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:154067000-154070800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:154067800-154069400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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