Variant report

Variant	rs55747871
Chromosome Location	chr6:150522613-150522614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150520781..150525407-chr6:150526478..150529331,4	K562	blood:
2	chr6:150521985..150525407-chr6:150525748..150528930,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34244559	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869853	1.00[ASN][1000 genomes]
rs4870368	1.00[ASN][1000 genomes]
rs6906581	0.94[EUR][1000 genomes]
rs73007966	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7751160	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9397729	1.00[ASN][1000 genomes]
rs975211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150514800-150524000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:150517600-150529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150518200-150523000	Weak transcription	Stomach Mucosa	stomach
4	chr6:150518200-150530800	Enhancers	Fetal Heart	heart
5	chr6:150518600-150523200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:150518600-150523200	Weak transcription	Lung	lung
7	chr6:150519800-150524200	Enhancers	K562	blood
8	chr6:150519800-150524800	Enhancers	Fetal Intestine Large	intestine
9	chr6:150520200-150524400	Enhancers	Fetal Intestine Small	intestine
10	chr6:150520200-150525200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:150520600-150523200	Weak transcription	Right Ventricle	heart
12	chr6:150520800-150523200	Enhancers	Colonic Mucosa	Colon
13	chr6:150520800-150523200	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:150521000-150523400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:150521600-150523200	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr6:150521600-150526600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:150521800-150523000	Weak transcription	NHEK	skin
18	chr6:150521800-150523200	Weak transcription	Esophagus	oesophagus
19	chr6:150521800-150523600	Weak transcription	Psoas Muscle	Psoas
20	chr6:150521800-150523800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:150522000-150523000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:150522000-150523200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:150522000-150523200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:150522000-150523200	Weak transcription	HMEC	breast
25	chr6:150522000-150523400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:150522000-150523400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:150522200-150523200	Weak transcription	Left Ventricle	heart
28	chr6:150522200-150523400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:150522200-150523400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:150522200-150523400	Weak transcription	Right Atrium	heart
31	chr6:150522200-150523400	Weak transcription	Small Intestine	intestine
32	chr6:150522200-150523600	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:150522400-150523000	Enhancers	Pancreas	Pancrea
34	chr6:150522400-150524000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:150522600-150523000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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