Variant report

Variant	rs557478982
Chromosome Location	chr4:85824777-85824778
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85824461..85826915-chr4:85836524..85838821,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv879515	chr4:85789940-85843244	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv508295	chr4:85822802-85885027	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85778000-85836600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:85778800-85832800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:85779800-85828800	Weak transcription	Spleen	Spleen
4	chr4:85781800-85848600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:85783600-85826600	Weak transcription	Ovary	ovary
6	chr4:85792000-85825000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:85792000-85828600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:85798400-85833400	Weak transcription	Fetal Brain Female	brain
9	chr4:85798800-85873200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:85799600-85841600	Weak transcription	HMEC	breast
11	chr4:85801400-85825000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:85801400-85843800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:85803600-85826600	Weak transcription	HSMMtube	muscle
14	chr4:85808600-85825200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:85809000-85872800	Weak transcription	A549	lung
16	chr4:85809600-85834600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:85810200-85828200	Weak transcription	HUVEC	blood vessel
18	chr4:85811800-85828600	Weak transcription	Psoas Muscle	Psoas
19	chr4:85811800-85833000	Weak transcription	Aorta	Aorta
20	chr4:85811800-85851200	Weak transcription	Esophagus	oesophagus
21	chr4:85812800-85828400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:85812800-85843600	Weak transcription	HepG2	liver
23	chr4:85813000-85858800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:85813200-85831000	Weak transcription	Lung	lung
25	chr4:85814400-85828800	Weak transcription	Right Ventricle	heart
26	chr4:85814400-85833000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:85814400-85836000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:85814400-85837000	Weak transcription	Fetal Kidney	kidney
29	chr4:85814600-85825200	Weak transcription	Fetal Intestine Large	intestine
30	chr4:85814600-85826800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr4:85814600-85828400	Weak transcription	Brain Anterior Caudate	brain
32	chr4:85814600-85828600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:85814600-85833000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:85814600-85834400	Weak transcription	Fetal Lung	lung
35	chr4:85814600-85835800	Weak transcription	Colon Smooth Muscle	Colon
36	chr4:85814600-85836000	Weak transcription	Brain Substantia Nigra	brain
37	chr4:85814600-85836400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:85816000-85824800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:85816000-85837400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr4:85816000-85852400	Weak transcription	Left Ventricle	heart
41	chr4:85816800-85828400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr4:85816800-85841600	Weak transcription	NH-A	brain
43	chr4:85817000-85825000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr4:85817000-85832600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:85819000-85825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:85819400-85836800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr4:85820200-85828400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr4:85821600-85858400	Weak transcription	Pancreas	Pancrea
49	chr4:85822000-85831000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:85822200-85825000	Enhancers	HUES64 Cell Line	embryonic stem cell

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