Variant report

Variant	rs55755745
Chromosome Location	chr20:15794267-15794268
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11697766	0.97[EUR][1000 genomes]
rs11700387	0.95[EUR][1000 genomes]
rs16996594	0.98[EUR][1000 genomes]
rs16996600	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16996618	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16996626	0.88[EUR][1000 genomes]
rs17632947	0.86[EUR][1000 genomes]
rs17633068	0.96[EUR][1000 genomes]
rs17705904	0.87[EUR][1000 genomes]
rs1990396	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41439350	0.87[EUR][1000 genomes]
rs6131725	0.91[EUR][1000 genomes]
rs6135552	0.91[EUR][1000 genomes]
rs6135553	0.91[EUR][1000 genomes]
rs62194718	0.87[EUR][1000 genomes]
rs7266511	0.82[EUR][1000 genomes]
rs73097220	0.95[EUR][1000 genomes]
rs73097238	0.98[EUR][1000 genomes]
rs763659	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs763661	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv585643	chr20:15759361-15796051	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv912793	chr20:15760969-15807441	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1847965	chr20:15766727-15807441	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv585644	chr20:15766727-15807441	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2754713	chr20:15785800-15816800	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15790200-15799000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:15793000-15794800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:15794000-15794800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:15794000-15795200	Weak transcription	HMEC	breast
5	chr20:15794000-15795400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:15794200-15795400	Weak transcription	NHEK	skin
7	chr20:15794200-15796000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links