Variant report
Variant | rs16996594 |
---|---|
Chromosome Location | chr20:15789861-15789862 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11697766 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11700387 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs16996498 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs16996600 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
rs16996618 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs16996626 | 0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs17626441 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs17632947 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17633068 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17704936 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs17705904 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1990396 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs41439350 | 0.91[CEU][hapmap];0.87[EUR][1000 genomes] |
rs4813193 | 0.84[CEU][hapmap] |
rs55755745 | 0.98[EUR][1000 genomes] |
rs6043534 | 1.00[CEU][hapmap] |
rs6131725 | 0.91[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6135515 | 0.83[CEU][hapmap] |
rs6135552 | 0.91[CEU][hapmap];0.89[EUR][1000 genomes] |
rs6135553 | 0.91[CEU][hapmap];0.89[EUR][1000 genomes] |
rs62194718 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7266511 | 0.84[CEU][hapmap];0.82[EUR][1000 genomes] |
rs7270597 | 0.83[CEU][hapmap] |
rs73097220 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73097238 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs763659 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs763661 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv585643 | chr20:15759361-15796051 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv912793 | chr20:15760969-15807441 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | esv1847965 | chr20:15766727-15807441 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv585644 | chr20:15766727-15807441 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | esv2754713 | chr20:15785800-15816800 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv965832 | chr20:15789045-15790454 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15786400-15790400 | Enhancers | Primary B cells from peripheral blood | blood |
2 | chr20:15789000-15790000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
3 | chr20:15789800-15790200 | Enhancers | Fetal Brain Male | brain |