Variant report
Variant | rs17626441 |
---|---|
Chromosome Location | chr20:15747610-15747611 |
allele | A/C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11699274 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11699695 | 0.81[EUR][1000 genomes] |
rs11700387 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes] |
rs16996498 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16996594 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs16996600 | 1.00[CEU][hapmap] |
rs16996618 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs16996626 | 0.91[CEU][hapmap] |
rs17632947 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
rs17633068 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
rs17704829 | 0.90[AMR][1000 genomes] |
rs17704936 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17705904 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1990396 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs41439350 | 0.90[CEU][hapmap] |
rs4813193 | 0.83[CEU][hapmap] |
rs59069925 | 0.82[EUR][1000 genomes] |
rs6043534 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6131725 | 0.91[CEU][hapmap] |
rs6135515 | 0.81[CEU][hapmap] |
rs6135552 | 0.90[CEU][hapmap] |
rs6135553 | 0.91[CEU][hapmap] |
rs62194689 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62194715 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs62194718 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7266511 | 0.83[CEU][hapmap] |
rs7270597 | 0.81[CEU][hapmap] |
rs763659 | 1.00[CEU][hapmap] |
rs763661 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv912791 | chr20:15702037-15759361 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv912792 | chr20:15724399-15749292 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv458934 | chr20:15738086-15772582 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv585641 | chr20:15738086-15772582 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv585642 | chr20:15738086-15772876 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15744000-15748800 | Weak transcription | Aorta | Aorta |
2 | chr20:15744800-15748000 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
3 | chr20:15744800-15748000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
4 | chr20:15747600-15748600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |