Variant report
| Variant | rs4813193 |
|---|---|
| Chromosome Location | chr20:15754160-15754161 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:15752035..15754742-chr9:125427247..125429430,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11700387 | 0.84[CEU][hapmap] |
| rs12480226 | 0.81[JPT][hapmap] |
| rs16996498 | 0.83[CEU][hapmap] |
| rs16996594 | 0.84[CEU][hapmap] |
| rs16996600 | 0.83[CEU][hapmap] |
| rs16996618 | 0.84[CEU][hapmap] |
| rs17626441 | 0.83[CEU][hapmap] |
| rs17632947 | 0.84[CEU][hapmap] |
| rs17633068 | 0.84[CEU][hapmap] |
| rs17704936 | 0.84[CEU][hapmap] |
| rs17705904 | 0.83[CEU][hapmap] |
| rs1990396 | 0.84[CEU][hapmap] |
| rs4813194 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6043533 | 0.84[ASN][1000 genomes] |
| rs6043534 | 0.83[CEU][hapmap] |
| rs6043537 | 0.84[ASN][1000 genomes] |
| rs6131700 | 0.81[CHB][hapmap] |
| rs6131725 | 0.92[CEU][hapmap] |
| rs6135515 | 0.83[CEU][hapmap];0.82[CHB][hapmap] |
| rs6135552 | 0.91[CEU][hapmap] |
| rs6135553 | 0.92[CEU][hapmap] |
| rs763659 | 0.84[CEU][hapmap] |
| rs763661 | 0.83[CEU][hapmap] |
| rs995410 | 0.80[JPT][hapmap];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv912791 | chr20:15702037-15759361 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv458934 | chr20:15738086-15772582 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv585641 | chr20:15738086-15772582 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv585642 | chr20:15738086-15772876 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:15751800-15754200 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 2 | chr20:15753000-15755000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 3 | chr20:15753600-15754600 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
