Variant report

Variant	rs6043537
Chromosome Location	chr20:15757226-15757227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12480226	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12480767	0.93[EUR][1000 genomes]
rs12481631	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4813193	0.84[ASN][1000 genomes]
rs4813195	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58995211	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6043533	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6043540	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6043542	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6043544	1.00[EUR][1000 genomes]
rs6043545	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6131696	0.93[EUR][1000 genomes]
rs6131700	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6131705	0.93[EUR][1000 genomes]
rs6135495	0.93[EUR][1000 genomes]
rs6135499	0.93[EUR][1000 genomes]
rs6135510	0.93[EUR][1000 genomes]
rs6135516	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6135518	0.93[EUR][1000 genomes]
rs995410	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv458934	chr20:15738086-15772582	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv585641	chr20:15738086-15772582	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv585642	chr20:15738086-15772876	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2762063	chr20:15755244-15765167	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15755200-15757600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr20:15755400-15757400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr20:15757200-15757800	Enhancers	HUES48 Cell Line	embryonic stem cell

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