Variant report
Variant | rs12480226 |
---|---|
Chromosome Location | chr20:15761192-15761193 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs12480702 | 1.00[CEU][hapmap] |
rs12480767 | 0.93[EUR][1000 genomes] |
rs12481631 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
rs16996568 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes] |
rs2041423 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
rs2206712 | 0.81[AMR][1000 genomes] |
rs2206713 | 0.81[AMR][1000 genomes] |
rs2223674 | 1.00[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes] |
rs2327965 | 1.00[TSI][hapmap] |
rs4369926 | 1.00[CEU][hapmap] |
rs4813193 | 0.81[JPT][hapmap] |
rs4813195 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58995211 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6043501 | 1.00[TSI][hapmap] |
rs6043533 | 0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6043537 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6043540 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6043542 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6043544 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6043545 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6079969 | 0.85[MEX][hapmap] |
rs6131696 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
rs6131700 | 0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes] |
rs6131705 | 0.93[EUR][1000 genomes] |
rs6131722 | 1.00[CEU][hapmap] |
rs6135495 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
rs6135499 | 0.93[EUR][1000 genomes] |
rs6135510 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs6135515 | 0.87[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
rs6135516 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6135518 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.93[EUR][1000 genomes] |
rs6135527 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap] |
rs6135533 | 1.00[CEU][hapmap] |
rs6135542 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
rs995410 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv458934 | chr20:15738086-15772582 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv585641 | chr20:15738086-15772582 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv585642 | chr20:15738086-15772876 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | esv2762063 | chr20:15755244-15765167 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
8 | nsv585643 | chr20:15759361-15796051 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv912793 | chr20:15760969-15807441 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15758200-15768800 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
2 | chr20:15760400-15765800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |