Variant report
Variant | rs4369926 |
---|---|
Chromosome Location | chr20:15783271-15783272 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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rs_ID | r2[population] |
---|---|
rs12480226 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes] |
rs12480702 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12481631 | 1.00[CEU][hapmap];0.81[CHB][hapmap] |
rs16996568 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2041423 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2206712 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2206713 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2223674 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs58792672 | 0.84[AMR][1000 genomes] |
rs6043542 | 0.81[AMR][1000 genomes] |
rs6043545 | 0.81[AMR][1000 genomes] |
rs6079969 | 0.82[CHB][hapmap] |
rs6131696 | 1.00[CEU][hapmap] |
rs6131722 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6131725 | 0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6135495 | 1.00[CEU][hapmap];0.81[CHB][hapmap] |
rs6135518 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[ASN][1000 genomes] |
rs6135527 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[ASN][1000 genomes] |
rs6135533 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6135542 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6135544 | 0.86[ASN][1000 genomes] |
rs6135546 | 0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6135552 | 0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6135553 | 0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6135554 | 0.84[CHB][hapmap];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv585643 | chr20:15759361-15796051 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv912793 | chr20:15760969-15807441 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | esv1847965 | chr20:15766727-15807441 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv585644 | chr20:15766727-15807441 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |