Variant report

Variant	rs6079969
Chromosome Location	chr20:15769704-15769705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12480226	0.85[MEX][hapmap]
rs12480702	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs16996568	0.82[CHB][hapmap]
rs2041423	0.82[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap]
rs2191523	1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs2223674	0.82[CHB][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap]
rs4369926	0.82[CHB][hapmap]
rs6131722	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6135542	0.82[CHB][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv458934	chr20:15738086-15772582	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv585641	chr20:15738086-15772582	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv585642	chr20:15738086-15772876	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv585643	chr20:15759361-15796051	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv912793	chr20:15760969-15807441	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1847965	chr20:15766727-15807441	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv585644	chr20:15766727-15807441	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15767200-15770800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:15767800-15770200	Enhancers	Brain Germinal Matrix	brain
3	chr20:15768000-15769800	Enhancers	Brain Cingulate Gyrus	brain
4	chr20:15768400-15770200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr20:15768600-15770200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr20:15768800-15769800	Enhancers	Brain Substantia Nigra	brain
7	chr20:15768800-15770000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr20:15768800-15770000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:15768800-15770200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr20:15768800-15770400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:15768800-15770400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr20:15769000-15769800	Weak transcription	Aorta	Aorta
13	chr20:15769400-15770000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr20:15769600-15769800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr20:15769600-15769800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr20:15769600-15769800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr20:15769600-15769800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr20:15769600-15769800	Active TSS	Brain Angular Gyrus	brain
19	chr20:15769600-15769800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr20:15769600-15770000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr20:15769600-15770000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr20:15769600-15770000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr20:15769600-15770000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr20:15769600-15770000	Active TSS	Brain Hippocampus Middle	brain
25	chr20:15769600-15770000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr20:15769600-15770200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr20:15769600-15770200	Active TSS	Brain Anterior Caudate	brain

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