Variant report

Variant	rs6043501
Chromosome Location	chr20:15723847-15723848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11697060	0.91[EUR][1000 genomes]
rs12480226	1.00[TSI][hapmap]
rs12481600	0.85[EUR][1000 genomes]
rs12481609	0.85[EUR][1000 genomes]
rs16996452	1.00[CEU][hapmap]
rs17625810	0.91[EUR][1000 genomes]
rs2041423	1.00[TSI][hapmap]
rs2223674	1.00[TSI][hapmap]
rs2327965	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4142410	1.00[CEU][hapmap]
rs55889651	0.87[EUR][1000 genomes]
rs56344260	0.88[EUR][1000 genomes]
rs6043502	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60774277	0.89[EUR][1000 genomes]
rs6135542	1.00[TSI][hapmap]
rs62194110	0.90[EUR][1000 genomes]
rs62194669	0.85[EUR][1000 genomes]
rs73107333	0.85[EUR][1000 genomes]
rs73107335	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15721200-15724200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:15723400-15729800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:15723800-15731000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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