Variant report

Variant	rs55756990
Chromosome Location	chr8:112392969-112392970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-422N16.3.1-4	chr8:112392832-112393097	NONHSAT128327

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10087264	1.00[EUR][1000 genomes]
rs10087560	1.00[EUR][1000 genomes]
rs10096432	1.00[EUR][1000 genomes]
rs10097331	1.00[EUR][1000 genomes]
rs10097434	1.00[EUR][1000 genomes]
rs10102136	1.00[EUR][1000 genomes]
rs10105222	1.00[EUR][1000 genomes]
rs10111953	1.00[EUR][1000 genomes]
rs10112264	1.00[EUR][1000 genomes]
rs10217055	1.00[EUR][1000 genomes]
rs11985091	1.00[EUR][1000 genomes]
rs11988375	1.00[EUR][1000 genomes]
rs11989287	1.00[EUR][1000 genomes]
rs11990106	1.00[EUR][1000 genomes]
rs11995417	1.00[EUR][1000 genomes]
rs11995425	1.00[EUR][1000 genomes]
rs11997164	1.00[EUR][1000 genomes]
rs16882142	1.00[EUR][1000 genomes]
rs16882144	1.00[EUR][1000 genomes]
rs16882151	1.00[EUR][1000 genomes]
rs16882157	1.00[EUR][1000 genomes]
rs2067009	1.00[EUR][1000 genomes]
rs28431296	1.00[EUR][1000 genomes]
rs28451549	1.00[EUR][1000 genomes]
rs28464514	1.00[EUR][1000 genomes]
rs28473496	1.00[EUR][1000 genomes]
rs28492788	1.00[EUR][1000 genomes]
rs28498297	1.00[EUR][1000 genomes]
rs28579296	1.00[EUR][1000 genomes]
rs28641608	1.00[EUR][1000 genomes]
rs28681647	1.00[EUR][1000 genomes]
rs28682951	1.00[EUR][1000 genomes]
rs28712168	1.00[EUR][1000 genomes]
rs28713372	1.00[EUR][1000 genomes]
rs28775383	1.00[EUR][1000 genomes]
rs35704298	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56184333	1.00[EUR][1000 genomes]
rs56184481	1.00[EUR][1000 genomes]
rs56734986	1.00[EUR][1000 genomes]
rs57780848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58600570	1.00[EUR][1000 genomes]
rs60684783	1.00[EUR][1000 genomes]
rs61244162	1.00[EUR][1000 genomes]
rs6992650	1.00[EUR][1000 genomes]
rs6993002	1.00[EUR][1000 genomes]
rs7006161	1.00[EUR][1000 genomes]
rs7010351	1.00[EUR][1000 genomes]
rs7010371	1.00[EUR][1000 genomes]
rs73326030	1.00[EUR][1000 genomes]
rs73326091	1.00[EUR][1000 genomes]
rs73327914	1.00[EUR][1000 genomes]
rs73327934	1.00[EUR][1000 genomes]
rs73327954	1.00[EUR][1000 genomes]
rs73703824	1.00[EUR][1000 genomes]
rs73703825	1.00[EUR][1000 genomes]
rs73703829	1.00[EUR][1000 genomes]
rs73703831	1.00[EUR][1000 genomes]
rs73703832	1.00[EUR][1000 genomes]
rs73703834	1.00[EUR][1000 genomes]
rs73704135	1.00[EUR][1000 genomes]
rs73704417	1.00[EUR][1000 genomes]
rs73706319	1.00[EUR][1000 genomes]
rs7828275	1.00[EUR][1000 genomes]
rs7832909	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv891311	chr8:112088322-112604086	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv465763	chr8:112325064-112712038	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv611902	chr8:112325064-112712038	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1031144	chr8:112327722-112558646	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1027249	chr8:112327722-112711706	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv539721	chr8:112327722-112711706	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv891313	chr8:112359706-112548351	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1028518	chr8:112382141-112459890	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1026097	chr8:112382141-112714042	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv984551	chr8:112391116-112436694	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112387800-112399600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:112392400-112393000	Enhancers	Adipose Nuclei	Adipose
3	chr8:112392600-112393200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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