Variant report

Variant	rs73703825
Chromosome Location	chr8:112201807-112201808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1072047	1.00[EUR][1000 genomes]
rs11989287	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11992423	1.00[EUR][1000 genomes]
rs11993102	1.00[EUR][1000 genomes]
rs11993181	1.00[EUR][1000 genomes]
rs11993334	1.00[EUR][1000 genomes]
rs11993388	1.00[EUR][1000 genomes]
rs11994333	1.00[EUR][1000 genomes]
rs11994698	1.00[EUR][1000 genomes]
rs11996209	1.00[EUR][1000 genomes]
rs11998055	1.00[EUR][1000 genomes]
rs11998337	1.00[EUR][1000 genomes]
rs11998359	1.00[EUR][1000 genomes]
rs1365736	1.00[EUR][1000 genomes]
rs1427189	1.00[EUR][1000 genomes]
rs1991363	1.00[EUR][1000 genomes]
rs28547967	1.00[EUR][1000 genomes]
rs55756990	1.00[EUR][1000 genomes]
rs56184333	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56184481	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56298818	1.00[EUR][1000 genomes]
rs56734986	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57484848	1.00[EUR][1000 genomes]
rs57780848	1.00[EUR][1000 genomes]
rs57905423	1.00[EUR][1000 genomes]
rs58163906	1.00[EUR][1000 genomes]
rs58600570	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60684783	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61244162	1.00[EUR][1000 genomes]
rs6469342	1.00[EUR][1000 genomes]
rs6469343	1.00[EUR][1000 genomes]
rs6469344	1.00[EUR][1000 genomes]
rs6985652	1.00[EUR][1000 genomes]
rs73316607	1.00[EUR][1000 genomes]
rs73317294	1.00[EUR][1000 genomes]
rs73332950	1.00[EUR][1000 genomes]
rs73332956	1.00[EUR][1000 genomes]
rs73332960	1.00[EUR][1000 genomes]
rs73703824	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73703829	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73703831	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73703832	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73703834	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73704135	1.00[EUR][1000 genomes]
rs73704417	1.00[EUR][1000 genomes]
rs73706234	1.00[EUR][1000 genomes]
rs73706235	1.00[EUR][1000 genomes]
rs73706236	1.00[EUR][1000 genomes]
rs73706237	1.00[EUR][1000 genomes]
rs73706238	1.00[EUR][1000 genomes]
rs73706319	1.00[EUR][1000 genomes]
rs7833747	1.00[EUR][1000 genomes]
rs7837586	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030494	chr8:111779352-112421812	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv891302	chr8:111987798-112238390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv891306	chr8:112021630-112238390	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv891310	chr8:112079211-112238390	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv891311	chr8:112088322-112604086	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv891312	chr8:112111911-112238390	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1034184	chr8:112171949-112274721	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112200600-112202000	Enhancers	HMEC	breast
2	chr8:112200600-112202000	Enhancers	HSMMtube	muscle
3	chr8:112200600-112202200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:112201200-112202000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:112201400-112206400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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