Variant report

Variant	rs557579861
Chromosome Location	chr9:100862810-100862811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100684128..100686572-chr9:100861650..100863444,2	K562	blood:
2	chr9:100858708..100861627-chr9:100861648..100863594,2	MCF-7	breast:
3	chr9:100855944..100858108-chr9:100861699..100863538,2	MCF-7	breast:
4	chr9:100862346..100865171-chr9:100880500..100883017,2	K562	blood:
5	chr9:100860198..100865318-chr9:100878989..100883996,6	MCF-7	breast:
6	chr9:100861454..100863501-chr9:100865367..100867490,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106785	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv614935	chr9:100861387-100876284	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100847400-100869400	Weak transcription	A549	lung
2	chr9:100847600-100867000	Weak transcription	Hela-S3	cervix
3	chr9:100850400-100868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:100850400-100880400	Weak transcription	HSMM	muscle
5	chr9:100850600-100863000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:100850600-100864400	Weak transcription	Brain Germinal Matrix	brain
7	chr9:100850600-100875400	Weak transcription	NHLF	lung
8	chr9:100850600-100880600	Weak transcription	Fetal Lung	lung
9	chr9:100854600-100870800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:100854800-100863800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:100854800-100870800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:100855000-100864400	Weak transcription	Brain Angular Gyrus	brain
13	chr9:100855000-100866800	Weak transcription	Placenta	Placenta
14	chr9:100855000-100868200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:100855200-100864400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:100855200-100864400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:100855600-100864000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:100855600-100864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:100857800-100869400	Weak transcription	Left Ventricle	heart
20	chr9:100858200-100868000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:100858200-100869000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:100858400-100872000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:100858600-100866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:100858600-100880400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:100858600-100880400	Weak transcription	Brain Anterior Caudate	brain
26	chr9:100858800-100864400	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:100858800-100867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:100859000-100867000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:100859200-100880600	Weak transcription	Gastric	stomach
30	chr9:100859400-100864600	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr9:100859600-100864400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr9:100860000-100869000	Strong transcription	Fetal Intestine Small	intestine
33	chr9:100860200-100880800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr9:100860600-100864600	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr9:100860600-100868000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:100861400-100863800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:100861400-100868000	Enhancers	Primary hematopoietic stem cells	blood
38	chr9:100861400-100871800	Enhancers	Primary B cells from peripheral blood	blood
39	chr9:100861400-100880600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:100861800-100864200	Weak transcription	Brain Substantia Nigra	brain
41	chr9:100862000-100863800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr9:100862200-100872200	Enhancers	Primary B cells from cord blood	blood
43	chr9:100862200-100872400	Weak transcription	Esophagus	oesophagus
44	chr9:100862400-100863000	Enhancers	Stomach Mucosa	stomach
45	chr9:100862400-100863600	Enhancers	Primary T cells from cord blood	blood
46	chr9:100862400-100863600	Enhancers	Fetal Intestine Large	intestine
47	chr9:100862400-100863600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr9:100862400-100863800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:100862400-100864000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr9:100862400-100864400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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