Variant report

Variant	rs55759705
Chromosome Location	chr5:115865167-115865168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6879748	0.98[AFR][1000 genomes]
rs6898539	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518494	chr5:115864578-115869260	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115828200-115865400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:115845800-115867200	Weak transcription	Right Ventricle	heart
3	chr5:115857400-115865400	Weak transcription	Ovary	ovary
4	chr5:115858200-115867000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:115858400-115873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:115859400-115870000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:115860000-115865400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:115860000-115869600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:115860000-115872000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:115860000-115872200	Enhancers	HepG2	liver
11	chr5:115860200-115867000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:115860600-115865600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:115861000-115870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:115861200-115865600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:115861600-115867000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:115863200-115865800	Enhancers	Fetal Lung	lung
17	chr5:115863400-115865200	Enhancers	Fetal Heart	heart
18	chr5:115863400-115865600	Enhancers	Fetal Stomach	stomach
19	chr5:115863400-115865800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:115863600-115867000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr5:115863800-115865200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr5:115863800-115865600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:115864000-115865200	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr5:115864000-115865600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:115864000-115865800	Enhancers	Small Intestine	intestine
26	chr5:115864000-115866000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr5:115864000-115866000	Enhancers	Fetal Muscle Leg	muscle
28	chr5:115864000-115866200	Enhancers	Fetal Kidney	kidney
29	chr5:115864000-115867200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr5:115864200-115865200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:115864400-115865200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:115864400-115865600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:115864400-115867000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:115864400-115867000	Weak transcription	Lung	lung
35	chr5:115864400-115870200	Weak transcription	Left Ventricle	heart
36	chr5:115864600-115865200	Weak transcription	Colon Smooth Muscle	Colon
37	chr5:115864600-115865400	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr5:115864600-115866400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr5:115864600-115867000	Weak transcription	Psoas Muscle	Psoas
40	chr5:115864600-115867000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr5:115864600-115867400	Weak transcription	Pancreas	Pancrea
42	chr5:115864600-115867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:115864600-115869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr5:115864600-115869400	Weak transcription	Colonic Mucosa	Colon
45	chr5:115864600-115869600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr5:115864600-115870000	Weak transcription	Adipose Nuclei	Adipose
47	chr5:115864600-115870800	Enhancers	Fetal Intestine Large	intestine
48	chr5:115864600-115871600	Enhancers	Fetal Intestine Small	intestine
49	chr5:115864600-115872200	Weak transcription	Fetal Brain Male	brain
50	chr5:115864800-115865200	Enhancers	Duodenum Mucosa	Duodenum

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