Variant report

Variant rs6898539
Chromosome Location chr5:115857570-115857571
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115828200-115865400 Weak transcription Primary T cells from cord blood blood
2 chr5:115839600-115859800 Weak transcription Colonic Mucosa Colon
3 chr5:115841600-115858000 Enhancers iPS-15b Cell Line embryonic stem cell
4 chr5:115845800-115867200 Weak transcription Right Ventricle heart
5 chr5:115847200-115859800 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr5:115848600-115864000 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr5:115851000-115864000 Weak transcription Small Intestine intestine
8 chr5:115853000-115858000 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr5:115853000-115858800 Weak transcription Stomach Smooth Muscle stomach
10 chr5:115853200-115859000 Enhancers Fetal Muscle Leg muscle
11 chr5:115854200-115859600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr5:115854400-115858000 Enhancers iPS-20b Cell Line embryonic stem cell
13 chr5:115854600-115860800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr5:115854800-115858400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
15 chr5:115854800-115859800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr5:115855200-115858000 Weak transcription Fetal Kidney kidney
17 chr5:115855400-115858000 Weak transcription Fetal Intestine Large intestine
18 chr5:115855400-115858200 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr5:115855400-115864000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr5:115855600-115859800 Weak transcription Duodenum Mucosa Duodenum
21 chr5:115855800-115858200 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr5:115855800-115861200 Weak transcription H1 Cell Line embryonic stem cell
23 chr5:115856200-115862800 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr5:115856400-115859200 Enhancers Fetal Stomach stomach
25 chr5:115856400-115860800 Enhancers Brain Hippocampus Middle brain
26 chr5:115856400-115861200 Genic enhancers ES-I3 Cell Line embryonic stem cell
27 chr5:115856600-115857600 Enhancers Brain Substantia Nigra brain
28 chr5:115856600-115857800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr5:115856600-115861400 Enhancers Colon Smooth Muscle Colon
30 chr5:115856800-115857800 Enhancers Fetal Lung lung
31 chr5:115856800-115860400 Enhancers Brain Angular Gyrus brain
32 chr5:115857000-115858200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr5:115857000-115859200 Enhancers Rectal Smooth Muscle rectum
34 chr5:115857200-115858000 Weak transcription Fetal Intestine Small intestine
35 chr5:115857200-115858200 Weak transcription Placenta Placenta
36 chr5:115857200-115858400 Enhancers HUES6 Cell Line embryonic stem cell
37 chr5:115857200-115858600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr5:115857200-115858600 Weak transcription Brain Inferior Temporal Lobe brain
39 chr5:115857200-115858600 Weak transcription Fetal Muscle Trunk muscle
40 chr5:115857200-115859200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr5:115857200-115859400 Weak transcription Brain Anterior Caudate brain
42 chr5:115857200-115860000 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr5:115857200-115861800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr5:115857400-115857600 Enhancers iPS-18 Cell Line embryonic stem cell
45 chr5:115857400-115858200 Weak transcription HUES64 Cell Line embryonic stem cell
46 chr5:115857400-115858400 Weak transcription Brain Cingulate Gyrus brain
47 chr5:115857400-115858600 Weak transcription H9 Cell Line embryonic stem cell
48 chr5:115857400-115860600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr5:115857400-115860800 Weak transcription Psoas Muscle Psoas
50 chr5:115857400-115863200 Weak transcription ES-WA7 Cell Line embryonic stem cell

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