Variant report

Variant	rs55761409
Chromosome Location	chr9:16903603-16903604
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10118889	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10119493	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10119513	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10119515	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10435763	0.81[ASN][1000 genomes]
rs10733325	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10733326	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10733327	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10733328	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10733329	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10733330	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10738464	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10738465	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10756830	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10756833	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810660	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962677	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34473495	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34641134	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35133355	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35259357	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35619477	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4431684	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56395003	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57198485	0.80[AMR][1000 genomes]
rs57863895	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58134658	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019028	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7047070	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7047534	0.81[ASN][1000 genomes]
rs73422902	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73424711	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73424713	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73424715	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73424717	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73424719	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73646718	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954857	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs954858	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv892654	chr9:16898603-16941006	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	nsv8421	chr9:16899923-16904878	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv1034052	chr9:16903446-16913996	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv1029177	chr9:16903446-16914412	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3693021	chr9:16903446-16929803	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv466266	chr9:16903446-16950860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
12	nsv471286	chr9:16903446-16950860	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv613686	chr9:16903446-16950860	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16902000-16914800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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