Variant report

Variant	rs7047534
Chromosome Location	chr9:16886487-16886488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10118889	0.91[ASN][1000 genomes]
rs10119493	0.91[ASN][1000 genomes]
rs10119513	0.89[ASN][1000 genomes]
rs10119515	0.91[ASN][1000 genomes]
rs10435763	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733325	0.96[ASN][1000 genomes]
rs10733326	0.96[ASN][1000 genomes]
rs10733327	0.96[ASN][1000 genomes]
rs10733328	0.96[ASN][1000 genomes]
rs10733329	0.96[ASN][1000 genomes]
rs10733330	0.96[ASN][1000 genomes]
rs10738464	0.91[ASN][1000 genomes]
rs10738465	0.91[ASN][1000 genomes]
rs10756823	0.93[ASN][1000 genomes]
rs10756830	0.96[ASN][1000 genomes]
rs10756833	0.88[ASN][1000 genomes]
rs10810660	0.91[ASN][1000 genomes]
rs10962651	0.93[ASN][1000 genomes]
rs10962677	0.84[ASN][1000 genomes]
rs1339550	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34473495	0.84[ASN][1000 genomes]
rs34641134	0.84[ASN][1000 genomes]
rs35133355	0.84[ASN][1000 genomes]
rs35259357	0.84[ASN][1000 genomes]
rs35619477	0.84[ASN][1000 genomes]
rs4431684	0.96[ASN][1000 genomes]
rs4497063	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55761409	0.81[ASN][1000 genomes]
rs55913845	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56155231	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57863895	0.84[ASN][1000 genomes]
rs58134658	0.81[ASN][1000 genomes]
rs60176654	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60234091	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60618682	0.81[EUR][1000 genomes]
rs60880076	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66462982	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67322332	0.81[EUR][1000 genomes]
rs7019028	0.86[ASN][1000 genomes]
rs7024013	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7035522	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7039735	0.95[ASN][1000 genomes]
rs7044268	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7047070	0.96[ASN][1000 genomes]
rs7047512	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73422902	0.84[ASN][1000 genomes]
rs73424711	0.84[ASN][1000 genomes]
rs73424713	0.84[ASN][1000 genomes]
rs73424715	0.84[ASN][1000 genomes]
rs73424717	0.84[ASN][1000 genomes]
rs73424719	0.84[ASN][1000 genomes]
rs73646718	0.84[ASN][1000 genomes]
rs7860276	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7862084	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7862213	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs954857	0.91[ASN][1000 genomes]
rs954858	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
7	nsv613680	chr9:16882888-16887073	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613685	chr9:16884293-16887073	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16883600-16886600	Enhancers	Dnd41	blood
2	chr9:16886000-16887200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:16886200-16887600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:16886200-16888000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:16886400-16886800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:16886400-16887400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:16886400-16887600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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