Variant report

Variant	rs7024013
Chromosome Location	chr9:16872434-16872435
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr9:16869593-16872539	IMR90	lung:	n/a	chr9:16871181-16871190 chr9:16871535-16871545
2	NFIC	chr9:16871507-16872470	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr9:16871487-16872438	SK-N-SH	brain:	n/a	chr9:16872178-16872189

Variant related genes	Relation type
BNC2	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10435763	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10733325	0.81[ASN][1000 genomes]
rs10733326	0.81[ASN][1000 genomes]
rs10733327	0.81[ASN][1000 genomes]
rs10733328	0.81[ASN][1000 genomes]
rs10733329	0.81[ASN][1000 genomes]
rs10733330	0.81[ASN][1000 genomes]
rs10756823	0.88[ASN][1000 genomes]
rs10756830	0.81[ASN][1000 genomes]
rs10962651	0.88[ASN][1000 genomes]
rs1339550	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4431684	0.81[ASN][1000 genomes]
rs4497063	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55913845	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56155231	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59057888	0.91[EUR][1000 genomes]
rs60176654	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60234091	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60618682	0.93[EUR][1000 genomes]
rs60880076	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66462982	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67322332	0.93[EUR][1000 genomes]
rs7035522	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7039735	0.82[ASN][1000 genomes]
rs7044268	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7047070	0.81[ASN][1000 genomes]
rs7047512	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7047534	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7860276	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7862084	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7862213	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16872000-16872600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
2	chr9:16872000-16885000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16872200-16872600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr9:16872200-16872600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:16872200-16873200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:16872200-16874400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:16872200-16879400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:16872400-16872600	Enhancers	Primary hematopoietic stem cells	blood
9	chr9:16872400-16872600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:16872400-16872600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:16872400-16872600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:16872400-16872600	Enhancers	Fetal Muscle Trunk	muscle
13	chr9:16872400-16872600	Enhancers	A549	lung
14	chr9:16872400-16872600	Enhancers	HSMMtube	muscle
15	chr9:16872400-16872800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:16872400-16872800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:16872400-16872800	Enhancers	Fetal Stomach	stomach
18	chr9:16872400-16872800	Enhancers	Osteobl	bone
19	chr9:16872400-16873000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:16872400-16873400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:16872400-16873400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:16872400-16873400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:16872400-16873400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:16872400-16873400	Weak transcription	NH-A	brain
25	chr9:16872400-16873600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:16872400-16873600	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:16872400-16873800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:16872400-16873800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:16872400-16873800	Enhancers	NHLF	lung
30	chr9:16872400-16874000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:16872400-16874000	Enhancers	NHDF-Ad	bronchial

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