Variant report

Variant	rs7860276
Chromosome Location	chr9:16874141-16874142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10118889	0.85[ASN][1000 genomes]
rs10119493	0.85[ASN][1000 genomes]
rs10119513	0.83[ASN][1000 genomes]
rs10119515	0.85[ASN][1000 genomes]
rs10435763	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10733325	0.90[ASN][1000 genomes]
rs10733326	0.90[ASN][1000 genomes]
rs10733327	0.90[ASN][1000 genomes]
rs10733328	0.90[ASN][1000 genomes]
rs10733329	0.90[ASN][1000 genomes]
rs10733330	0.90[ASN][1000 genomes]
rs10738464	0.85[ASN][1000 genomes]
rs10738465	0.85[ASN][1000 genomes]
rs10756823	1.00[ASN][1000 genomes]
rs10756830	0.90[ASN][1000 genomes]
rs10756833	0.82[ASN][1000 genomes]
rs10810660	0.85[ASN][1000 genomes]
rs10962651	1.00[ASN][1000 genomes]
rs1339550	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4431684	0.90[ASN][1000 genomes]
rs4497063	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55913845	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56155231	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59057888	0.91[EUR][1000 genomes]
rs60176654	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60234091	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60618682	0.93[EUR][1000 genomes]
rs60880076	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66462982	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67322332	0.93[EUR][1000 genomes]
rs7024013	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7035522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039735	0.88[ASN][1000 genomes]
rs7044268	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7047070	0.90[ASN][1000 genomes]
rs7047512	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7047534	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7862084	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7862213	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954857	0.85[ASN][1000 genomes]
rs954858	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16872000-16885000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16872200-16874400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:16872200-16879400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:16873000-16874200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:16873400-16874200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr9:16873400-16874600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr9:16873600-16874200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:16873800-16875200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:16874000-16883400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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