Variant report

Variant	rs7862084
Chromosome Location	chr9:16869811-16869812
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10118889	0.86[ASN][1000 genomes]
rs10119493	0.86[ASN][1000 genomes]
rs10119513	0.84[ASN][1000 genomes]
rs10119515	0.86[ASN][1000 genomes]
rs10435763	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10733325	0.91[ASN][1000 genomes]
rs10733326	0.91[ASN][1000 genomes]
rs10733327	0.91[ASN][1000 genomes]
rs10733328	0.91[ASN][1000 genomes]
rs10733329	0.91[ASN][1000 genomes]
rs10733330	0.91[ASN][1000 genomes]
rs10738464	0.86[ASN][1000 genomes]
rs10738465	0.86[ASN][1000 genomes]
rs10756823	0.95[ASN][1000 genomes]
rs10756830	0.91[ASN][1000 genomes]
rs10756833	0.83[ASN][1000 genomes]
rs10810660	0.86[ASN][1000 genomes]
rs10962651	0.95[ASN][1000 genomes]
rs1339550	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4431684	0.91[ASN][1000 genomes]
rs4497063	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55913845	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56155231	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59057888	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60176654	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60234091	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60618682	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60880076	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66462982	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67322332	0.89[EUR][1000 genomes]
rs7019028	0.81[ASN][1000 genomes]
rs7024013	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7035522	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7039735	0.89[ASN][1000 genomes]
rs7044268	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7047070	0.91[ASN][1000 genomes]
rs7047512	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7047534	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7860276	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7862213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954857	0.86[ASN][1000 genomes]
rs954858	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv892653	chr9:16848790-16895610	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1018615	chr9:16865804-16960970	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
6	nsv540074	chr9:16865804-16960970	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16865000-16872000	Active TSS	Stomach Smooth Muscle	stomach
2	chr9:16866400-16871800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:16866600-16872200	Active TSS	NHLF	lung
4	chr9:16866800-16872000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr9:16867400-16870200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:16867600-16871600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:16867600-16872200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:16867600-16872200	Active TSS	Colon Smooth Muscle	Colon
9	chr9:16867600-16872400	Active TSS	Ovary	ovary
10	chr9:16867800-16871200	Active TSS	Fetal Stomach	stomach
11	chr9:16868000-16872200	Active TSS	Right Atrium	heart
12	chr9:16868000-16872200	Active TSS	HSMM	muscle
13	chr9:16868200-16872000	Active TSS	HSMMtube	muscle
14	chr9:16868400-16872400	Active TSS	Rectal Smooth Muscle	rectum
15	chr9:16868800-16870000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
16	chr9:16868800-16870600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:16868800-16872400	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr9:16869000-16870000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr9:16869000-16870000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
20	chr9:16869000-16870000	Weak transcription	Hela-S3	cervix
21	chr9:16869000-16870200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr9:16869000-16872200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
23	chr9:16869000-16872400	Active TSS	H1 Cell Line	embryonic stem cell
24	chr9:16869200-16870000	Flanking Active TSS	NHEK	skin
25	chr9:16869200-16870200	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr9:16869200-16871800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:16869200-16872200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:16869200-16872200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:16869200-16872200	Active TSS	Fetal Intestine Large	intestine
30	chr9:16869400-16870000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:16869400-16870000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
32	chr9:16869400-16870000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:16869400-16870000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:16869400-16870000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
35	chr9:16869400-16870000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
36	chr9:16869400-16870000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr9:16869400-16870200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
38	chr9:16869400-16870200	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
39	chr9:16869400-16870200	Bivalent/Poised TSS	Left Ventricle	heart
40	chr9:16869400-16870600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
41	chr9:16869400-16870800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
42	chr9:16869400-16871200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:16869400-16871200	Flanking Bivalent TSS/Enh	Dnd41	blood
44	chr9:16869400-16871600	Active TSS	Right Ventricle	heart
45	chr9:16869400-16872000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:16869400-16872000	Active TSS	Esophagus	oesophagus
47	chr9:16869400-16872000	Active TSS	Lung	lung
48	chr9:16869400-16872200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:16869400-16872200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
50	chr9:16869400-16872400	Active TSS	H9 Cell Line	embryonic stem cell

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