Variant report

Variant	rs55761963
Chromosome Location	chr11:68402629-68402630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10791987	0.83[ASN][1000 genomes]
rs10791988	0.83[ASN][1000 genomes]
rs11228313	0.83[ASN][1000 genomes]
rs11601281	0.85[ASN][1000 genomes]
rs11605472	0.86[ASN][1000 genomes]
rs12286536	0.85[ASN][1000 genomes]
rs12293615	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17149179	0.88[ASN][1000 genomes]
rs2186937	0.88[ASN][1000 genomes]
rs2510380	0.91[ASN][1000 genomes]
rs2510382	0.91[ASN][1000 genomes]
rs2510397	0.83[ASN][1000 genomes]
rs2510398	0.82[ASN][1000 genomes]
rs2510399	0.82[ASN][1000 genomes]
rs2513280	0.83[ASN][1000 genomes]
rs2513281	0.83[ASN][1000 genomes]
rs2513282	0.83[ASN][1000 genomes]
rs2513286	0.94[ASN][1000 genomes]
rs2513289	0.83[ASN][1000 genomes]
rs2513294	0.82[ASN][1000 genomes]
rs2513299	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2513303	0.81[ASN][1000 genomes]
rs28551086	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3018716	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35989399	0.88[ASN][1000 genomes]
rs4544002	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4930236	0.84[ASN][1000 genomes]
rs4930237	0.86[ASN][1000 genomes]
rs4930581	0.84[ASN][1000 genomes]
rs4930582	0.84[ASN][1000 genomes]
rs4930583	0.84[ASN][1000 genomes]
rs4930584	0.84[ASN][1000 genomes]
rs4930585	0.84[ASN][1000 genomes]
rs4930587	0.83[ASN][1000 genomes]
rs4930588	0.83[ASN][1000 genomes]
rs4930589	0.83[ASN][1000 genomes]
rs55975204	0.88[ASN][1000 genomes]
rs57813595	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59919614	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60538784	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs61705449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61889616	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7102308	0.86[ASN][1000 genomes]
rs7102438	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7107613	0.83[ASN][1000 genomes]
rs7116288	0.86[ASN][1000 genomes]
rs7116363	0.84[ASN][1000 genomes]
rs7128942	0.88[ASN][1000 genomes]
rs7129320	0.88[ASN][1000 genomes]
rs72936524	0.85[ASN][1000 genomes]
rs72936570	0.83[ASN][1000 genomes]
rs72936599	0.83[ASN][1000 genomes]
rs7932726	0.83[ASN][1000 genomes]
rs7948782	0.82[ASN][1000 genomes]
rs882979	0.81[ASN][1000 genomes]
rs948861	0.83[ASN][1000 genomes]
rs948863	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv897864	chr11:68367007-68453429	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55761963	CPT1A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68400800-68406200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:68401000-68411000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:68401000-68417400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:68401200-68412600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:68401800-68404400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:68402000-68403800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:68402400-68403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:68402600-68402800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr11:68402600-68402800	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr11:68402600-68402800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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