Variant report

Variant	rs72936570
Chromosome Location	chr11:68307139-68307140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:68306937..68308679-chr11:68348704..68351247,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11228294	0.83[ASN][1000 genomes]
rs11228295	0.83[ASN][1000 genomes]
rs12286536	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12291008	0.83[ASN][1000 genomes]
rs12293615	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17149179	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2186937	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2375639	0.88[AMR][1000 genomes]
rs2375640	0.86[AMR][1000 genomes]
rs2510380	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2510382	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2513286	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28551086	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35989399	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3867143	0.88[AMR][1000 genomes]
rs55761963	0.83[ASN][1000 genomes]
rs55975204	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56154705	0.87[AMR][1000 genomes]
rs56312530	0.91[AMR][1000 genomes]
rs57502260	0.86[AMR][1000 genomes]
rs57813595	0.83[ASN][1000 genomes]
rs60538784	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61705449	0.83[ASN][1000 genomes]
rs67446678	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7104806	0.88[AMR][1000 genomes]
rs7105218	0.86[AMR][1000 genomes]
rs7128942	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7129320	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72936524	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72936599	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935347	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68277600-68336000	Strong transcription	Dnd41	blood
2	chr11:68283000-68358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:68288600-68309000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:68292600-68308200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:68296400-68307800	Strong transcription	GM12878-XiMat	blood
6	chr11:68296600-68309200	Weak transcription	NH-A	brain
7	chr11:68296600-68316800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr11:68296800-68307200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:68297400-68308600	Strong transcription	Fetal Thymus	thymus
10	chr11:68299200-68384000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:68299800-68309200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:68300600-68313800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:68301000-68313400	Strong transcription	Primary T cells from cord blood	blood
14	chr11:68301200-68312800	Weak transcription	Stomach Mucosa	stomach
15	chr11:68301600-68309000	Weak transcription	Right Atrium	heart
16	chr11:68301600-68316800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:68302800-68313400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr11:68303000-68308600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:68303000-68309200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:68303800-68309400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr11:68303800-68317000	Strong transcription	Liver	Liver
22	chr11:68303800-68317400	Strong transcription	Primary B cells from cord blood	blood
23	chr11:68304000-68307400	Strong transcription	Osteobl	bone
24	chr11:68304000-68308800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:68304000-68384400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr11:68304200-68307800	Strong transcription	Fetal Kidney	kidney
27	chr11:68304400-68307600	Strong transcription	HepG2	liver
28	chr11:68304400-68307600	Strong transcription	NHDF-Ad	bronchial
29	chr11:68304400-68317000	Weak transcription	Small Intestine	intestine
30	chr11:68304600-68308600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr11:68304600-68309000	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:68304800-68307200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:68304800-68308600	Weak transcription	Brain Substantia Nigra	brain
34	chr11:68304800-68313200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr11:68305000-68307200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:68305000-68307800	Strong transcription	Hela-S3	cervix
37	chr11:68305000-68309200	Strong transcription	NHEK	skin
38	chr11:68305000-68317000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:68305200-68307200	Strong transcription	HMEC	breast
40	chr11:68305200-68307400	Strong transcription	HUVEC	blood vessel
41	chr11:68305200-68307600	Strong transcription	Primary hematopoietic stem cells	blood
42	chr11:68305200-68307600	Strong transcription	K562	blood
43	chr11:68305200-68307800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:68305200-68308800	Strong transcription	Placenta	Placenta
45	chr11:68305200-68309200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:68305200-68310000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:68305200-68313200	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:68305200-68316600	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr11:68305200-68316800	Strong transcription	Fetal Intestine Large	intestine
50	chr11:68305200-68317000	Strong transcription	Thymus	Thymus

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