Variant report

Variant	rs557667062
Chromosome Location	chr10:44789301-44789302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:44789236-44789628	IMR90	lung:	n/a	n/a
2	POLR2A	chr10:44789239-44789708	U87	brain:	n/a	n/a
3	POLR2A	chr10:44788687-44789713	U87	brain:	n/a	n/a
4	POLR2A	chr10:44789249-44789681	U87	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CXCL12-1	chr10:44789285-44789628	XLOC_008795

Variant related genes	Relation type
ENSG00000229116	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3447098	chr10:44787696-44789544	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422728	chr10:44788646-44792944	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44787800-44790800	Enhancers	Fetal Heart	heart
2	chr10:44787800-44791600	Enhancers	Ovary	ovary
3	chr10:44788000-44789400	Enhancers	Lung	lung
4	chr10:44788200-44790400	Weak transcription	Pancreas	Pancrea
5	chr10:44788200-44790600	Weak transcription	Spleen	Spleen
6	chr10:44788200-44791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:44788400-44789800	Enhancers	Fetal Kidney	kidney
8	chr10:44788600-44789400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44788600-44789400	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr10:44788600-44789400	Flanking Active TSS	Osteobl	bone
11	chr10:44788600-44789800	Enhancers	NHLF	lung
12	chr10:44788600-44791200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:44788600-44791600	Enhancers	NHDF-Ad	bronchial
14	chr10:44788800-44789400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:44788800-44789400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:44788800-44789400	Bivalent Enhancer	Small Intestine	intestine
17	chr10:44788800-44789400	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr10:44789000-44789400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
19	chr10:44789000-44789400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:44789000-44789400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr10:44789000-44789400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
22	chr10:44789000-44789800	Bivalent Enhancer	Fetal Stomach	stomach
23	chr10:44789000-44790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:44789000-44790000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:44789000-44790000	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr10:44789000-44790200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr10:44789000-44791400	Enhancers	GM12878-XiMat	blood
28	chr10:44789000-44791600	Enhancers	Right Ventricle	heart
29	chr10:44789200-44789400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
30	chr10:44789200-44789400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:44789200-44789400	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr10:44789200-44789400	Enhancers	Brain Hippocampus Middle	brain
33	chr10:44789200-44789400	Enhancers	Left Ventricle	heart
34	chr10:44789200-44789800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:44789200-44789800	Enhancers	Fetal Lung	lung
36	chr10:44789200-44789800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:44789200-44789800	Enhancers	HepG2	liver
38	chr10:44789200-44789800	Enhancers	NH-A	brain
39	chr10:44789200-44790000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
40	chr10:44789200-44790000	Enhancers	Brain Anterior Caudate	brain
41	chr10:44789200-44790200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr10:44789200-44790200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
43	chr10:44789200-44790200	Enhancers	Colon Smooth Muscle	Colon
44	chr10:44789200-44790200	Enhancers	Right Atrium	heart
45	chr10:44789200-44790400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:44789200-44790400	Weak transcription	Brain Substantia Nigra	brain
47	chr10:44789200-44790400	Weak transcription	Gastric	stomach
48	chr10:44789200-44791000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:44789200-44791000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:44789200-44791200	Enhancers	Skeletal Muscle Female	skeletal muscle

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