Variant report

Variant	rs55774155
Chromosome Location	chr8:58806903-58806904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10504248	1.00[ASN][1000 genomes]
rs1369771	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369772	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436018	1.00[ASN][1000 genomes]
rs16918685	1.00[ASN][1000 genomes]
rs16922716	1.00[ASN][1000 genomes]
rs2082912	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099520	1.00[ASN][1000 genomes]
rs58879638	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471659	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992698	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680595	1.00[ASN][1000 genomes]
rs73683803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831323	chr8:58692548-58849862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58805800-58807600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:58806000-58807400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:58806200-58807400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr8:58806200-58807800	Enhancers	Primary T cells from cord blood	blood
5	chr8:58806400-58807000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:58806400-58807400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr8:58806400-58807400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:58806400-58807600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:58806400-58807800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr8:58806600-58807000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr8:58806600-58807000	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links