Variant report

Variant	rs557762879
Chromosome Location	chr3:178551613-178551614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436263	chr3:178548158-178552756	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3328220	chr3:178549008-178552006	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3355849	chr3:178549083-178552231	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3425836	chr3:178549433-178551906	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2536068	chr3:178549681-178551779	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv18827	chr3:178550206-178568168	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	nsv592643	chr3:178550246-178553756	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv592644	chr3:178550246-178554554	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv592645	chr3:178550246-178568129	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178541200-178558400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:178542000-178563600	Weak transcription	Aorta	Aorta
3	chr3:178545200-178557800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:178546400-178563000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:178550400-178562800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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