Variant report
| Variant | rs55779636 |
|---|---|
| Chromosome Location | chr11:74960358-74960359 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:14)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:14 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:74734190..74735729-chr11:74958349..74960779,2 | K562 | blood: | |
| 2 | chr11:74640173..74641444-chr11:74959409..74960765,6 | K562 | blood: | |
| 3 | chr11:74959370..74960360-chr2:165456185..165456726,2 | MCF-7 | breast: | |
| 4 | chr11:74924940..74926021-chr11:74959362..74960424,4 | MCF-7 | breast: | |
| 5 | chr11:74733636..74734614-chr11:74959392..74960654,8 | K562 | blood: | |
| 6 | chr11:74640435..74641917-chr11:74959346..74960996,13 | MCF-7 | breast: | |
| 7 | chr11:74915763..74916910-chr11:74959359..74960694,5 | MCF-7 | breast: | |
| 8 | chr11:74951677..74954927-chr11:74958323..74960938,5 | K562 | blood: | |
| 9 | chr11:74925056..74926007-chr11:74958917..74960409,9 | MCF-7 | breast: | |
| 10 | chr11:74959661..74961897-chr11:74963344..74965921,3 | K562 | blood: | |
| 11 | chr11:74851375..74852262-chr11:74959346..74960408,13 | MCF-7 | breast: | |
| 12 | chr11:74853916..74856659-chr11:74959240..74960360,18 | MCF-7 | breast: | |
| 13 | chr11:74733532..74734794-chr11:74959383..74960736,14 | MCF-7 | breast: | |
| 14 | chr11:74851287..74852438-chr11:74958974..74960362,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255136 | Chromatin interaction |
| ENSG00000261594 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs55977292 | 0.80[AFR][1000 genomes] |
| rs56278619 | 1.00[AFR][1000 genomes] |
| rs56709079 | 0.80[AFR][1000 genomes] |
| rs58600041 | 1.00[AFR][1000 genomes] |
| rs59496705 | 0.80[AFR][1000 genomes] |
| rs59905687 | 1.00[AFR][1000 genomes] |
| rs60585327 | 0.80[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049887 | chr11:74937977-75040438 | Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036292 | chr11:74937977-75059496 | Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 65 gene(s) | inside rSNPs | diseases |
| 3 | nsv1041640 | chr11:74945824-75174688 | Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 94 gene(s) | inside rSNPs | diseases |
| 4 | nsv832211 | chr11:74945839-75106125 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 66 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
