Variant report
| Variant | rs55977292 |
|---|---|
| Chromosome Location | chr11:74966212-74966213 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:74641794..74643776-chr11:74964024..74966770,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254429 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12721493 | 1.00[AMR][1000 genomes] |
| rs34931451 | 1.00[AMR][1000 genomes] |
| rs41429652 | 1.00[AMR][1000 genomes] |
| rs55779636 | 0.80[AFR][1000 genomes] |
| rs56278619 | 0.80[AFR][1000 genomes] |
| rs56709079 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58600041 | 0.80[AFR][1000 genomes] |
| rs59496705 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59905687 | 0.80[AFR][1000 genomes] |
| rs60313751 | 1.00[AMR][1000 genomes] |
| rs60585327 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61324508 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049887 | chr11:74937977-75040438 | Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036292 | chr11:74937977-75059496 | Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 65 gene(s) | inside rSNPs | diseases |
| 3 | nsv1041640 | chr11:74945824-75174688 | Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 94 gene(s) | inside rSNPs | diseases |
| 4 | nsv832211 | chr11:74945839-75106125 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 66 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
