Variant report

Variant	rs55779931
Chromosome Location	chr15:34033214-34033215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1036003	0.87[ASN][1000 genomes]
rs2278311	0.87[ASN][1000 genomes]
rs2288608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41496150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45501293	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55828732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56003089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56011633	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56089586	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56122459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56193977	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58389894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59003168	0.86[ASN][1000 genomes]
rs59471218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59494883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59538569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61219904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713287	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72713290	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713298	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72713299	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713302	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715104	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715106	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715109	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715110	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715123	0.87[ASN][1000 genomes]
rs72715125	0.87[ASN][1000 genomes]
rs8032293	0.87[ASN][1000 genomes]
rs8040629	0.87[ASN][1000 genomes]
rs9672287	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34019800-34034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:34024200-34034800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:34025400-34035200	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:34030400-34033400	Strong transcription	Stomach Smooth Muscle	stomach
7	chr15:34030400-34038000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:34030600-34034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:34030600-34034200	Weak transcription	Fetal Stomach	stomach
10	chr15:34030600-34034400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr15:34030600-34038200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:34030600-34038200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:34030800-34034600	Weak transcription	Brain Substantia Nigra	brain
14	chr15:34030800-34035200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:34030800-34038200	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:34030800-34040000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:34031000-34034600	Strong transcription	Aorta	Aorta
18	chr15:34031800-34034800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:34032200-34034000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:34032400-34041000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:34033000-34034000	Strong transcription	Brain Anterior Caudate	brain
22	chr15:34033000-34035400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:34033200-34033400	Enhancers	Fetal Kidney	kidney

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