Variant report

Variant	rs56011633
Chromosome Location	chr15:34030904-34030905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34030460..34032334-chr15:34033934..34035565,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2288608	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41279212	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41496150	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs45501293	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55779931	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55828732	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56003089	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56089586	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56122459	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56193977	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58389894	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59471218	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59494883	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59538569	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61219904	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72713287	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72713290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72713293	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72713294	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72713295	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72713299	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72713302	0.80[ASN][1000 genomes]
rs72715104	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715106	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715109	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715110	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:34008400-34031000	Weak transcription	Aorta	Aorta
4	chr15:34019800-34034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:34021000-34031000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:34024200-34034800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:34025400-34032200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:34025400-34035200	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:34029800-34031000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr15:34030400-34033400	Strong transcription	Stomach Smooth Muscle	stomach
11	chr15:34030400-34038000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:34030600-34032200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:34030600-34033000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:34030600-34034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:34030600-34034200	Weak transcription	Fetal Stomach	stomach
16	chr15:34030600-34034400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:34030600-34038200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:34030600-34038200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:34030800-34031000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr15:34030800-34031000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr15:34030800-34031000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
22	chr15:34030800-34031200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr15:34030800-34034600	Weak transcription	Brain Substantia Nigra	brain
24	chr15:34030800-34035200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:34030800-34038200	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:34030800-34040000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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