Variant report

Variant	rs55785027
Chromosome Location	chr2:153503260-153503261
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:153031090..153033664-chr2:153502377..153505718,4	MCF-7	breast:
2	chr2:153500933..153503507-chr2:153514364..153517064,2	K562	blood:
3	chr2:153501231..153504179-chr2:153533212..153536871,4	K562	blood:
4	chr2:153495557..153498820-chr2:153502340..153505191,3	K562	blood:
5	chr2:153495009..153497280-chr2:153502746..153506564,3	K562	blood:
6	chr2:153498882..153503478-chr2:153504081..153508204,8	K562	blood:

Variant related genes	Relation type
ENSG00000115145	Chromatin interaction
ENSG00000196504	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10172024	0.88[EUR][1000 genomes]
rs10181485	0.88[EUR][1000 genomes]
rs10200667	0.88[EUR][1000 genomes]
rs1036526	0.90[EUR][1000 genomes]
rs1065266	0.91[EUR][1000 genomes]
rs10931229	0.86[EUR][1000 genomes]
rs1128804	0.81[EUR][1000 genomes]
rs11544718	0.87[EUR][1000 genomes]
rs12477881	0.80[EUR][1000 genomes]
rs12997814	0.87[EUR][1000 genomes]
rs13005368	0.87[EUR][1000 genomes]
rs13010731	0.80[EUR][1000 genomes]
rs13017428	0.86[EUR][1000 genomes]
rs13031469	0.91[EUR][1000 genomes]
rs1370498	0.90[EUR][1000 genomes]
rs1437678	0.91[EUR][1000 genomes]
rs16831548	0.89[EUR][1000 genomes]
rs1992146	0.88[EUR][1000 genomes]
rs2118377	0.87[EUR][1000 genomes]
rs2304559	0.86[EUR][1000 genomes]
rs2346534	0.90[EUR][1000 genomes]
rs2346541	0.88[EUR][1000 genomes]
rs2346542	0.88[EUR][1000 genomes]
rs2346550	0.81[EUR][1000 genomes]
rs3171980	0.90[EUR][1000 genomes]
rs34585982	0.80[EUR][1000 genomes]
rs34668102	0.87[EUR][1000 genomes]
rs3748939	0.85[EUR][1000 genomes]
rs3762506	0.89[EUR][1000 genomes]
rs3762507	0.90[EUR][1000 genomes]
rs3811566	0.85[EUR][1000 genomes]
rs4664122	0.88[EUR][1000 genomes]
rs4664602	0.82[EUR][1000 genomes]
rs4664604	0.85[EUR][1000 genomes]
rs4664607	0.84[EUR][1000 genomes]
rs6434161	0.88[EUR][1000 genomes]
rs6434162	0.85[EUR][1000 genomes]
rs6713779	0.92[EUR][1000 genomes]
rs6746321	0.88[EUR][1000 genomes]
rs7559219	0.87[EUR][1000 genomes]
rs7560393	0.87[EUR][1000 genomes]
rs7570759	0.82[EUR][1000 genomes]
rs7576152	0.82[EUR][1000 genomes]
rs7592669	0.87[EUR][1000 genomes]
rs7593347	0.88[EUR][1000 genomes]
rs7605709	0.88[EUR][1000 genomes]
rs9288121	0.92[EUR][1000 genomes]
rs9288125	0.90[EUR][1000 genomes]
rs9288127	0.87[EUR][1000 genomes]
rs9646744	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv834420	chr2:153339646-153535460	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv834421	chr2:153470109-153664235	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv3693437	chr2:153484685-153505003	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153457200-153505000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:153467200-153504000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:153469000-153509800	Weak transcription	Small Intestine	intestine
4	chr2:153471000-153507000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:153472000-153522000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:153474400-153505000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:153484400-153504200	Strong transcription	Fetal Muscle Leg	muscle
8	chr2:153487600-153505000	Weak transcription	Fetal Thymus	thymus
9	chr2:153491600-153504000	Strong transcription	HepG2	liver
10	chr2:153492000-153508200	Weak transcription	Primary B cells from cord blood	blood
11	chr2:153492400-153506200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:153492400-153513400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:153492800-153503400	Strong transcription	Fetal Intestine Large	intestine
14	chr2:153492800-153504400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr2:153492800-153504600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:153494600-153503400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:153495000-153506400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:153495400-153517400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:153496000-153506400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr2:153497000-153531800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:153497200-153504200	Weak transcription	Pancreas	Pancrea
22	chr2:153497200-153514000	Weak transcription	Colonic Mucosa	Colon
23	chr2:153497200-153521200	Weak transcription	Esophagus	oesophagus
24	chr2:153497400-153516200	Weak transcription	Spleen	Spleen
25	chr2:153497800-153503800	Weak transcription	Liver	Liver
26	chr2:153497800-153504200	Weak transcription	Gastric	stomach
27	chr2:153497800-153504400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:153498000-153504200	Weak transcription	Right Ventricle	heart
29	chr2:153498200-153503400	Weak transcription	HSMMtube	muscle
30	chr2:153498200-153507000	Weak transcription	HUVEC	blood vessel
31	chr2:153498400-153503400	Weak transcription	Fetal Brain Male	brain
32	chr2:153498400-153512200	Weak transcription	Thymus	Thymus
33	chr2:153499000-153507600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:153499200-153503800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr2:153499200-153504600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:153499800-153507200	Weak transcription	Primary T cells from cord blood	blood
37	chr2:153500000-153512200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:153500200-153503400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr2:153500400-153517200	Weak transcription	Hela-S3	cervix
40	chr2:153500600-153503800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr2:153500800-153503400	Weak transcription	Brain Germinal Matrix	brain
42	chr2:153500800-153504200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr2:153500800-153509800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr2:153501000-153505200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:153501200-153504200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr2:153501200-153504200	Weak transcription	Ovary	ovary
47	chr2:153501200-153508400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr2:153501400-153504200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr2:153501400-153504600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr2:153501400-153531800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links