Variant report

Variant	rs55786399
Chromosome Location	chr5:151945469-151945470
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10155517	0.88[EUR][1000 genomes]
rs10515675	0.93[EUR][1000 genomes]
rs10515676	0.93[EUR][1000 genomes]
rs11167584	0.93[EUR][1000 genomes]
rs11956651	0.93[EUR][1000 genomes]
rs12188564	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359939	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13361438	0.86[EUR][1000 genomes]
rs17452991	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17453481	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453530	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17453740	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17453775	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17454420	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17455800	0.83[EUR][1000 genomes]
rs17550343	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17565365	0.84[EUR][1000 genomes]
rs17565470	0.83[EUR][1000 genomes]
rs17565505	0.81[EUR][1000 genomes]
rs2961756	0.88[EUR][1000 genomes]
rs2961760	0.89[EUR][1000 genomes]
rs2961765	0.88[EUR][1000 genomes]
rs2961766	0.89[EUR][1000 genomes]
rs2964230	0.89[EUR][1000 genomes]
rs2964231	0.87[EUR][1000 genomes]
rs3923209	0.88[EUR][1000 genomes]
rs4246033	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4398624	0.93[EUR][1000 genomes]
rs4406125	0.93[EUR][1000 genomes]
rs4478308	0.89[EUR][1000 genomes]
rs4484412	0.93[EUR][1000 genomes]
rs4557395	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580766	0.90[EUR][1000 genomes]
rs4958316	0.90[EUR][1000 genomes]
rs4958317	0.90[EUR][1000 genomes]
rs4958320	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4958323	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958560	0.88[EUR][1000 genomes]
rs4958561	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4958562	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958564	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958566	0.93[EUR][1000 genomes]
rs4958567	0.93[EUR][1000 genomes]
rs4958568	0.92[EUR][1000 genomes]
rs4958569	0.91[EUR][1000 genomes]
rs55648729	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56014830	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67979431	0.91[EUR][1000 genomes]
rs6871699	0.93[EUR][1000 genomes]
rs6876403	0.87[EUR][1000 genomes]
rs6876723	0.86[EUR][1000 genomes]
rs6884556	0.93[EUR][1000 genomes]
rs6895969	0.93[EUR][1000 genomes]
rs72795376	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72795379	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72795389	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797233	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72797237	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72797241	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72797243	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72797251	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797254	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72797262	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797296	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72799113	0.84[EUR][1000 genomes]
rs9324734	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151937000-151946200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr5:151937000-151946800	Weak transcription	Brain Substantia Nigra	brain
3	chr5:151938200-151947200	Weak transcription	Fetal Brain Male	brain
4	chr5:151940800-151945800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:151943800-151945800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:151944000-151947600	Enhancers	Brain Germinal Matrix	brain
7	chr5:151944400-151945600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:151944400-151945600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:151944400-151945600	Weak transcription	Brain Angular Gyrus	brain
10	chr5:151944400-151945600	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:151945200-151946800	Weak transcription	Fetal Brain Female	brain

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