Variant report

Variant	rs55787899
Chromosome Location	chr2:134463872-134463873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:134463568..134466020-chr2:134468723..134471299,2	K562	blood:
2	chr2:134451976..134454903-chr2:134463867..134466183,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10496709	0.88[ASN][1000 genomes]
rs12464809	0.84[ASN][1000 genomes]
rs12465737	0.88[ASN][1000 genomes]
rs12466546	0.84[ASN][1000 genomes]
rs12467346	0.92[ASN][1000 genomes]
rs12472423	0.92[ASN][1000 genomes]
rs1446748	0.90[ASN][1000 genomes]
rs1446749	0.90[ASN][1000 genomes]
rs1470510	0.91[ASN][1000 genomes]
rs1562349	0.91[ASN][1000 genomes]
rs16828705	0.90[ASN][1000 genomes]
rs16828728	0.90[ASN][1000 genomes]
rs17767492	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17767728	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17768541	0.81[ASN][1000 genomes]
rs17819620	0.81[ASN][1000 genomes]
rs1867894	0.91[ASN][1000 genomes]
rs1992783	0.91[ASN][1000 genomes]
rs1992784	0.91[ASN][1000 genomes]
rs34163450	0.84[ASN][1000 genomes]
rs35593895	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4369917	0.92[ASN][1000 genomes]
rs4369918	0.91[ASN][1000 genomes]
rs55715603	0.94[ASN][1000 genomes]
rs55777158	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55932202	0.92[ASN][1000 genomes]
rs56111185	0.91[ASN][1000 genomes]
rs56160327	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56341649	0.90[ASN][1000 genomes]
rs58457553	0.91[ASN][1000 genomes]
rs6706052	0.92[ASN][1000 genomes]
rs72843241	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72843245	0.94[ASN][1000 genomes]
rs72843247	0.92[ASN][1000 genomes]
rs72843252	0.91[ASN][1000 genomes]
rs72843260	0.90[ASN][1000 genomes]
rs72843263	0.90[ASN][1000 genomes]
rs72843280	0.81[ASN][1000 genomes]
rs7586145	0.97[EUR][1000 genomes]
rs921087	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134463400-134464400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:134463600-134466800	Weak transcription	Brain Angular Gyrus	brain

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