Variant report

Variant	rs55794080
Chromosome Location	chr12:60647079-60647080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60644951..60647277-chr12:60691077..60693506,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11173348	1.00[EUR][1000 genomes]
rs11173363	1.00[EUR][1000 genomes]
rs11173369	1.00[EUR][1000 genomes]
rs11831127	1.00[EUR][1000 genomes]
rs11831587	1.00[EUR][1000 genomes]
rs11832299	1.00[EUR][1000 genomes]
rs11835954	1.00[EUR][1000 genomes]
rs11836045	1.00[EUR][1000 genomes]
rs11837627	1.00[EUR][1000 genomes]
rs12579713	1.00[EUR][1000 genomes]
rs12580881	1.00[EUR][1000 genomes]
rs12581293	1.00[EUR][1000 genomes]
rs12581979	1.00[EUR][1000 genomes]
rs12582010	1.00[EUR][1000 genomes]
rs55800300	1.00[EUR][1000 genomes]
rs55905809	1.00[EUR][1000 genomes]
rs55941783	1.00[EUR][1000 genomes]
rs56178609	1.00[EUR][1000 genomes]
rs57533761	1.00[EUR][1000 genomes]
rs57848253	1.00[EUR][1000 genomes]
rs58739436	1.00[EUR][1000 genomes]
rs58913061	1.00[EUR][1000 genomes]
rs59474956	1.00[EUR][1000 genomes]
rs60259520	1.00[EUR][1000 genomes]
rs61561862	1.00[EUR][1000 genomes]
rs7306958	1.00[EUR][1000 genomes]
rs7310477	1.00[EUR][1000 genomes]
rs73106200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73108242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73109153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73109163	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73109166	1.00[AFR][1000 genomes]
rs73109201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73109750	1.00[EUR][1000 genomes]
rs73109762	1.00[EUR][1000 genomes]
rs73111632	1.00[EUR][1000 genomes]
rs73111634	1.00[EUR][1000 genomes]
rs73111640	1.00[EUR][1000 genomes]
rs73111650	1.00[EUR][1000 genomes]
rs73111657	1.00[EUR][1000 genomes]
rs73111669	1.00[EUR][1000 genomes]
rs73113476	1.00[EUR][1000 genomes]
rs73113496	1.00[EUR][1000 genomes]
rs73113502	1.00[EUR][1000 genomes]
rs73114735	1.00[EUR][1000 genomes]
rs73114791	1.00[EUR][1000 genomes]
rs73114794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73115184	1.00[EUR][1000 genomes]
rs73115194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73117117	1.00[EUR][1000 genomes]
rs73120658	1.00[EUR][1000 genomes]
rs7960722	1.00[EUR][1000 genomes]
rs867948	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60647000-60647200	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links