Variant report

Variant	rs58913061
Chromosome Location	chr12:60567640-60567641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:60567260..60569470-chr12:60576239..60579233,2	MCF-7	breast:
2	chr12:60545261..60548162-chr12:60566803..60568706,2	K562	blood:
3	chr12:60567397..60569705-chr12:60602116..60603911,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11173348	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173369	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831127	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832299	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835954	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11836045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12579713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12580881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581293	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581979	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12582010	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55670123	0.90[ASN][1000 genomes]
rs55794080	1.00[EUR][1000 genomes]
rs55800300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55941783	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56178609	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57533761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57848253	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58739436	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59474956	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60259520	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61561862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139265	1.00[ASN][1000 genomes]
rs7306958	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7310477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73108224	0.90[ASN][1000 genomes]
rs73108227	0.90[ASN][1000 genomes]
rs73108230	0.90[ASN][1000 genomes]
rs73108233	0.90[ASN][1000 genomes]
rs73108234	0.90[ASN][1000 genomes]
rs73108239	0.90[ASN][1000 genomes]
rs73108244	0.90[ASN][1000 genomes]
rs73108245	0.90[ASN][1000 genomes]
rs73109153	1.00[EUR][1000 genomes]
rs73109163	1.00[EUR][1000 genomes]
rs73109201	1.00[EUR][1000 genomes]
rs73109750	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73109762	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73109768	0.90[ASN][1000 genomes]
rs73111632	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73111634	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73111640	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73111650	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73111657	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73111669	1.00[EUR][1000 genomes]
rs73113476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73113496	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73113502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73114735	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73114791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73114794	1.00[EUR][1000 genomes]
rs73115184	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73115194	1.00[EUR][1000 genomes]
rs73117117	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73120658	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7314006	1.00[ASN][1000 genomes]
rs7960722	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60563600-60568000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:60566600-60567800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr12:60566600-60569600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:60566800-60568200	Weak transcription	NHDF-Ad	bronchial
5	chr12:60566800-60568400	Weak transcription	NHLF	lung
6	chr12:60567000-60568000	Weak transcription	NH-A	brain
7	chr12:60567200-60568200	Weak transcription	HUVEC	blood vessel
8	chr12:60567200-60582400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:60567400-60567800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:60567400-60567800	Weak transcription	Hela-S3	cervix
11	chr12:60567600-60568800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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