Variant report

Variant	rs73108245
Chromosome Location	chr12:60495166-60495167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60466885..60469119-chr12:60493136..60496064,3	MCF-7	breast:
2	chr12:60493772..60496447-chr12:60496844..60499476,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11173348	0.90[ASN][1000 genomes]
rs11173363	0.90[ASN][1000 genomes]
rs11173369	0.90[ASN][1000 genomes]
rs11831127	0.90[ASN][1000 genomes]
rs11831587	0.90[ASN][1000 genomes]
rs11832299	0.90[ASN][1000 genomes]
rs11835954	0.90[ASN][1000 genomes]
rs11836045	0.90[ASN][1000 genomes]
rs11837627	0.90[ASN][1000 genomes]
rs12305114	0.89[ASN][1000 genomes]
rs12306523	0.89[ASN][1000 genomes]
rs12578393	0.89[ASN][1000 genomes]
rs12579713	0.90[ASN][1000 genomes]
rs12580881	0.90[ASN][1000 genomes]
rs12581293	0.90[ASN][1000 genomes]
rs12581498	0.89[ASN][1000 genomes]
rs12581979	0.90[ASN][1000 genomes]
rs12582010	0.90[ASN][1000 genomes]
rs3912930	0.89[ASN][1000 genomes]
rs4129725	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55670123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55731614	0.89[ASN][1000 genomes]
rs55800300	0.90[ASN][1000 genomes]
rs55810530	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55905809	0.90[ASN][1000 genomes]
rs55941783	0.90[ASN][1000 genomes]
rs56115471	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56150658	0.89[ASN][1000 genomes]
rs56178609	0.90[ASN][1000 genomes]
rs56194985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56370880	0.89[ASN][1000 genomes]
rs57533761	0.90[ASN][1000 genomes]
rs57848253	0.90[ASN][1000 genomes]
rs58246390	0.89[ASN][1000 genomes]
rs58739436	1.00[ASN][1000 genomes]
rs58913061	0.90[ASN][1000 genomes]
rs59474956	0.90[ASN][1000 genomes]
rs60131526	0.89[ASN][1000 genomes]
rs60259520	1.00[ASN][1000 genomes]
rs61561862	0.90[ASN][1000 genomes]
rs7135268	0.89[ASN][1000 genomes]
rs7139265	0.90[ASN][1000 genomes]
rs7306958	0.90[ASN][1000 genomes]
rs7310477	0.90[ASN][1000 genomes]
rs73106125	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73106138	0.89[ASN][1000 genomes]
rs73108215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73108224	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73108227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73108230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73108232	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73108233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73108234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73108239	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73108242	1.00[EUR][1000 genomes]
rs73108244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73109750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73109762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73109768	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73111632	1.00[ASN][1000 genomes]
rs73111634	1.00[ASN][1000 genomes]
rs73111640	1.00[ASN][1000 genomes]
rs73111650	1.00[ASN][1000 genomes]
rs73111657	1.00[ASN][1000 genomes]
rs73111669	0.82[ASN][1000 genomes]
rs73113476	0.90[ASN][1000 genomes]
rs73113496	0.90[ASN][1000 genomes]
rs73113502	0.90[ASN][1000 genomes]
rs73114735	0.90[ASN][1000 genomes]
rs73114791	0.90[ASN][1000 genomes]
rs73115184	0.90[ASN][1000 genomes]
rs73117117	0.90[ASN][1000 genomes]
rs73120658	0.90[ASN][1000 genomes]
rs7314006	0.90[ASN][1000 genomes]
rs73356698	0.89[ASN][1000 genomes]
rs73367172	0.89[ASN][1000 genomes]
rs73367179	0.89[ASN][1000 genomes]
rs7960722	0.90[ASN][1000 genomes]
rs867948	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048137	chr12:60432594-60515455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv826394	chr12:60491264-60516940	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60494400-60495800	Enhancers	HMEC	breast
2	chr12:60494400-60496000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:60494400-60496000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr12:60494400-60496000	Enhancers	NHDF-Ad	bronchial
5	chr12:60494600-60495800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:60494600-60495800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:60494800-60495800	Enhancers	NHEK	skin
8	chr12:60495000-60495800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:60495000-60495800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:60495000-60495800	Enhancers	Stomach Mucosa	stomach

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