Variant report
| Variant | rs73108232 |
|---|---|
| Chromosome Location | chr12:60480543-60480544 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:60478315..60480971-chr12:60488037..60490719,3 | MCF-7 | breast: | |
| 2 | chr12:60473802..60475803-chr12:60480234..60482937,2 | MCF-7 | breast: | |
| 3 | chr12:60472741..60475079-chr12:60479250..60481071,2 | K562 | blood: | |
| 4 | chr12:60463450..60465824-chr12:60478986..60481258,2 | MCF-7 | breast: | |
| 5 | chr12:60466814..60469463-chr12:60479017..60481348,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs4129725 | 1.00[AMR][1000 genomes] |
| rs55670123 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs55810530 | 1.00[AMR][1000 genomes] |
| rs56115471 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56194985 | 1.00[AMR][1000 genomes] |
| rs58739436 | 0.82[ASN][1000 genomes] |
| rs60259520 | 0.82[ASN][1000 genomes] |
| rs73106125 | 1.00[AMR][1000 genomes] |
| rs73108215 | 1.00[AMR][1000 genomes] |
| rs73108224 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73108227 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73108230 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73108233 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73108234 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73108239 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73108244 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73108245 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73109750 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73109762 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73109768 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs73111632 | 0.82[ASN][1000 genomes] |
| rs73111634 | 0.82[ASN][1000 genomes] |
| rs73111640 | 0.82[ASN][1000 genomes] |
| rs73111650 | 0.82[ASN][1000 genomes] |
| rs73111657 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899136 | chr12:60373244-60483607 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv559103 | chr12:60383069-60483607 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1048137 | chr12:60432594-60515455 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv428591 | chr12:60446360-60631044 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv427913 | chr12:60462443-60569344 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60478000-60489000 | Weak transcription | Pancreas | Pancrea |
| 2 | chr12:60478600-60492800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
