Variant report

Variant	rs7135268
Chromosome Location	chr12:60357338-60357339
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60355837..60358640-chr12:60365883..60368050,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10082957	0.84[EUR][1000 genomes]
rs11173230	0.92[EUR][1000 genomes]
rs11173243	0.92[EUR][1000 genomes]
rs11173245	0.92[EUR][1000 genomes]
rs12297974	0.92[EUR][1000 genomes]
rs12301829	0.92[EUR][1000 genomes]
rs12305114	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12306523	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12313195	0.92[EUR][1000 genomes]
rs12317797	0.92[EUR][1000 genomes]
rs12321932	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12578393	1.00[ASN][1000 genomes]
rs12581498	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2068673	0.92[EUR][1000 genomes]
rs3912930	1.00[ASN][1000 genomes]
rs4129725	1.00[ASN][1000 genomes]
rs55670123	0.89[ASN][1000 genomes]
rs55731614	1.00[ASN][1000 genomes]
rs55810530	1.00[ASN][1000 genomes]
rs56150658	1.00[ASN][1000 genomes]
rs56370880	1.00[ASN][1000 genomes]
rs58246390	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58739436	0.89[ASN][1000 genomes]
rs60131526	1.00[ASN][1000 genomes]
rs60259520	0.89[ASN][1000 genomes]
rs7136000	0.92[EUR][1000 genomes]
rs73106125	0.87[ASN][1000 genomes]
rs73106138	1.00[ASN][1000 genomes]
rs73108215	1.00[ASN][1000 genomes]
rs73108224	0.89[ASN][1000 genomes]
rs73108227	0.89[ASN][1000 genomes]
rs73108230	0.89[ASN][1000 genomes]
rs73108233	0.89[ASN][1000 genomes]
rs73108234	0.89[ASN][1000 genomes]
rs73108239	0.89[ASN][1000 genomes]
rs73108244	0.89[ASN][1000 genomes]
rs73108245	0.89[ASN][1000 genomes]
rs73109750	0.89[ASN][1000 genomes]
rs73109762	0.89[ASN][1000 genomes]
rs73109768	0.89[ASN][1000 genomes]
rs73111632	0.89[ASN][1000 genomes]
rs73111634	0.89[ASN][1000 genomes]
rs73111640	0.89[ASN][1000 genomes]
rs73111650	0.89[ASN][1000 genomes]
rs73111657	0.89[ASN][1000 genomes]
rs73356679	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73356683	0.82[EUR][1000 genomes]
rs73356698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367172	1.00[ASN][1000 genomes]
rs73367179	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7954708	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv826393	chr12:60293625-60359283	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv516042	chr12:60354307-60459370	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60357000-60357400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:60357200-60357400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:60357200-60357800	Enhancers	HUES6 Cell Line	embryonic stem cell

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