Variant report

Variant	rs55801599
Chromosome Location	chr8:113386107-113386108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10505179	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11984540	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11992784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996263	1.00[AMR][1000 genomes]
rs4452816	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55898902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56138373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57150366	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57215236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57429229	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58804086	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59681478	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59864641	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700617	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700620	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700634	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700635	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700636	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700642	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700662	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700663	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv891323	chr8:113359377-113394699	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113386000-113386200	Enhancers	Pancreas	Pancrea

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