Variant report

Variant	rs55802282
Chromosome Location	chr1:79156608-79156609
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11162526	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11162527	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12066013	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12081949	0.96[EUR][1000 genomes]
rs17394028	0.85[AMR][1000 genomes]
rs17394244	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs72673963	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs74092102	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7526675	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7536070	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79152800-79159000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:79153000-79159000	Enhancers	NHDF-Ad	bronchial
3	chr1:79153200-79158800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:79154400-79157200	Weak transcription	HMEC	breast
5	chr1:79154400-79157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:79154400-79158000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:79154400-79158200	Weak transcription	NHLF	lung
8	chr1:79156200-79157200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:79156200-79158600	Enhancers	Osteobl	bone
10	chr1:79156200-79159200	Enhancers	Hela-S3	cervix
11	chr1:79156400-79156800	Weak transcription	HSMM	muscle
12	chr1:79156400-79157800	Weak transcription	NH-A	brain
13	chr1:79156600-79157200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:79156600-79157600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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