Variant report

Variant	rs55805230
Chromosome Location	chr11:9799993-9799994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11821145	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822070	1.00[AMR][1000 genomes]
rs11823024	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823620	1.00[AMR][1000 genomes]
rs11824133	1.00[AMR][1000 genomes]
rs11824944	1.00[AMR][1000 genomes]
rs11826573	1.00[AMR][1000 genomes]
rs56004091	1.00[AMR][1000 genomes]
rs57233768	1.00[AMR][1000 genomes]
rs57297566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57735272	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57948595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58024914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58717942	1.00[AMR][1000 genomes]
rs58982478	1.00[AMR][1000 genomes]
rs73402415	1.00[AMR][1000 genomes]
rs73412193	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414129	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416199	1.00[AMR][1000 genomes]
rs73418575	1.00[AMR][1000 genomes]
rs73418583	1.00[AMR][1000 genomes]
rs73418601	1.00[AMR][1000 genomes]
rs73420636	1.00[AMR][1000 genomes]
rs73420638	1.00[AMR][1000 genomes]
rs73420639	1.00[AMR][1000 genomes]
rs73420640	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9780600-9813200	Weak transcription	Small Intestine	intestine
2	chr11:9781400-9800800	Weak transcription	Fetal Brain Female	brain
3	chr11:9781600-9801000	Weak transcription	Primary T cells from cord blood	blood
4	chr11:9781600-9809000	Weak transcription	Fetal Brain Male	brain
5	chr11:9781800-9801200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:9781800-9801600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:9784000-9801200	Weak transcription	Gastric	stomach
8	chr11:9787400-9801000	Weak transcription	Aorta	Aorta
9	chr11:9787800-9801000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:9787800-9805200	Weak transcription	Colonic Mucosa	Colon
11	chr11:9788000-9801000	Weak transcription	Lung	lung
12	chr11:9788200-9801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:9788600-9801600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:9789200-9801000	Weak transcription	Spleen	Spleen
15	chr11:9791000-9801000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:9792000-9801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:9792200-9801000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:9793800-9801000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:9794200-9801000	Weak transcription	Fetal Intestine Small	intestine
20	chr11:9795200-9812800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:9796600-9801400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:9796800-9800800	Weak transcription	HepG2	liver
23	chr11:9796800-9801200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:9796800-9803600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:9797000-9800000	Weak transcription	Brain Angular Gyrus	brain
26	chr11:9797000-9800200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:9797000-9801000	Weak transcription	Psoas Muscle	Psoas
28	chr11:9797000-9801200	Weak transcription	HUVEC	blood vessel
29	chr11:9797000-9801400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:9797200-9800000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:9797200-9800000	Weak transcription	Left Ventricle	heart
32	chr11:9797200-9800600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:9797200-9800800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:9797200-9800800	Weak transcription	HMEC	breast
35	chr11:9797200-9801000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:9797200-9801000	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:9797200-9801000	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:9797200-9801200	Weak transcription	Pancreas	Pancrea
39	chr11:9797200-9801400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:9797200-9801800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:9797200-9802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:9797400-9800000	Weak transcription	Ovary	ovary
43	chr11:9797400-9800400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr11:9797400-9801000	Weak transcription	Brain Anterior Caudate	brain
45	chr11:9797400-9801000	Weak transcription	Brain Substantia Nigra	brain
46	chr11:9797400-9801000	Weak transcription	Esophagus	oesophagus
47	chr11:9797400-9801000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:9797400-9801000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:9797400-9801200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:9797400-9821800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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