Variant report

Variant	rs55805411
Chromosome Location	chr15:72598067-72598068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72597786..72600011-chr15:72766508..72768760,2	K562	blood:
2	chr15:72522639..72525029-chr15:72595925..72598502,2	K562	blood:

Variant related genes	Relation type
ENSG00000166233	Chromatin interaction
ENSG00000067225	Chromatin interaction
ENSG00000261423	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs74025224	1.00[AMR][1000 genomes]
rs74025230	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74025246	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74025249	1.00[AMR][1000 genomes]
rs74026061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
2	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72573200-72603000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:72578000-72611800	Weak transcription	Ovary	ovary
5	chr15:72579000-72598200	Weak transcription	Brain Germinal Matrix	brain
6	chr15:72579600-72602400	Weak transcription	Primary T cells from cord blood	blood
7	chr15:72580800-72598200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:72581200-72598600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:72582000-72608000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:72582000-72611800	Weak transcription	Spleen	Spleen
11	chr15:72582600-72598600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:72583800-72611600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:72585600-72598200	Weak transcription	Fetal Stomach	stomach
14	chr15:72590200-72604800	Weak transcription	Aorta	Aorta
15	chr15:72590600-72607600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:72590800-72602000	Weak transcription	Left Ventricle	heart
17	chr15:72595400-72604600	Weak transcription	Lung	lung
18	chr15:72595600-72598400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:72596000-72612400	Weak transcription	Adipose Nuclei	Adipose
20	chr15:72596400-72599000	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:72597000-72598600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:72597000-72600400	Enhancers	Fetal Brain Male	brain
23	chr15:72597200-72598200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:72597200-72598400	Enhancers	HSMMtube	muscle
25	chr15:72597200-72598600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:72597200-72598600	Enhancers	HSMM	muscle
27	chr15:72597200-72598800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr15:72597400-72598200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:72597400-72598400	Enhancers	NH-A	brain
30	chr15:72597400-72598400	Enhancers	NHLF	lung
31	chr15:72597400-72598400	Enhancers	Osteobl	bone
32	chr15:72597400-72598600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:72597600-72598200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr15:72597600-72600400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:72597600-72605800	Weak transcription	Fetal Intestine Small	intestine
36	chr15:72597800-72598200	Enhancers	NHDF-Ad	bronchial
37	chr15:72597800-72598600	Enhancers	GM12878-XiMat	blood
38	chr15:72598000-72598600	Weak transcription	Brain Anterior Caudate	brain
39	chr15:72598000-72598800	Flanking Active TSS	Fetal Brain Female	brain
40	chr15:72598000-72600000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:72598000-72600000	Enhancers	Brain Angular Gyrus	brain

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