Variant report

Variant	rs74025230
Chromosome Location	chr15:72477239-72477240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72476582..72478189-chr7:104650247..104653086,2	MCF-7	breast:
2	chr15:72476500..72479008-chr15:72515049..72516702,2	MCF-7	breast:
3	chr15:72475748..72478253-chr15:72521364..72524573,3	MCF-7	breast:
4	chr15:72469515..72473441-chr15:72475665..72477509,3	K562	blood:
5	chr15:72475452..72478834-chr15:72520641..72523959,4	MCF-7	breast:
6	chr15:72476533..72478146-chr15:72764010..72766539,2	MCF-7	breast:
7	chr15:72476300..72478148-chr15:72481408..72483163,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55805411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74025224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74025234	0.85[AFR][1000 genomes]
rs74025246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74025249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026061	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
6	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72476200-72477400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
2	chr15:72476400-72477400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr15:72476600-72477400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr15:72477000-72477400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:72477000-72477400	Bivalent Enhancer	Fetal Kidney	kidney
6	chr15:72477000-72477400	Flanking Active TSS	A549	lung
7	chr15:72477000-72477400	Flanking Active TSS	Hela-S3	cervix
8	chr15:72477000-72479800	Weak transcription	Lung	lung
9	chr15:72477000-72487800	Weak transcription	Esophagus	oesophagus
10	chr15:72477000-72489400	Weak transcription	Right Atrium	heart
11	chr15:72477200-72477400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
12	chr15:72477200-72477400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
13	chr15:72477200-72477400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
14	chr15:72477200-72477400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:72477200-72477400	Bivalent Enhancer	HepG2	liver
16	chr15:72477200-72479600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:72477200-72479600	Weak transcription	HMEC	breast
18	chr15:72477200-72479800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:72477200-72480000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:72477200-72480800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:72477200-72484400	Weak transcription	NHEK	skin

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