Variant report

Variant	rs74025234
Chromosome Location	chr15:72488312-72488313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72487407..72489902-chr15:72490450..72492521,2	K562	blood:
2	chr15:72481643..72483870-chr15:72486883..72488513,2	K562	blood:
3	chr15:72485044..72488486-chr15:72520625..72523876,6	MCF-7	breast:
4	chr15:72488199..72491266-chr15:72491481..72494588,4	MCF-7	breast:
5	chr15:72484816..72489111-chr15:72521467..72525337,7	MCF-7	breast:
6	chr15:72481897..72484290-chr15:72488055..72489624,2	MCF-7	breast:
7	chr15:72487347..72489902-chr15:72491021..72493729,2	K562	blood:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28480543	1.00[EUR][1000 genomes]
rs60717166	0.83[AFR][1000 genomes]
rs74020942	0.83[AFR][1000 genomes]
rs74025223	0.83[AFR][1000 genomes]
rs74025230	0.85[AFR][1000 genomes]
rs74025246	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72477000-72489400	Weak transcription	Right Atrium	heart
2	chr15:72483400-72489000	Weak transcription	Fetal Intestine Small	intestine
3	chr15:72485200-72489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:72485200-72489000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:72485200-72489000	Enhancers	Placenta	Placenta
6	chr15:72485200-72489200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:72485200-72490400	Weak transcription	A549	lung
8	chr15:72485200-72490400	Weak transcription	HSMM	muscle
9	chr15:72485600-72489000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:72486600-72488800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:72486600-72489000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:72487000-72489000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:72487200-72488600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:72487200-72489000	Enhancers	HMEC	breast
15	chr15:72487400-72488800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:72487400-72489000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:72487600-72493600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:72487800-72488800	Weak transcription	Hela-S3	cervix
19	chr15:72487800-72489000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:72487800-72490400	Weak transcription	GM12878-XiMat	blood
21	chr15:72488000-72488600	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr15:72488000-72488800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr15:72488000-72489000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:72488000-72489000	Weak transcription	Lung	lung
25	chr15:72488000-72489000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:72488000-72489000	Enhancers	NHEK	skin
27	chr15:72488000-72489200	Weak transcription	Esophagus	oesophagus
28	chr15:72488000-72489800	Weak transcription	Gastric	stomach
29	chr15:72488000-72490400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:72488000-72491000	Weak transcription	K562	blood

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