Variant report

Variant	rs558130773
Chromosome Location	chr6:54328541-54328542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv528901	chr6:54290333-54337130	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv970682	chr6:54325591-54375255	Enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54327800-54329000	Enhancers	HSMMtube	muscle
2	chr6:54328200-54328800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:54328200-54328800	Enhancers	NHEK	skin
4	chr6:54328200-54329000	Enhancers	HSMM	muscle
5	chr6:54328400-54328800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:54328400-54328800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr6:54328400-54328800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:54328400-54328800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:54328400-54328800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:54328400-54328800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:54328400-54328800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:54328400-54329000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:54328400-54329000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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