Variant report

Variant	rs558169150
Chromosome Location	chr1:211589172-211589173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr1:211589065-211589303	HepG2	liver:	n/a	chr1:211589154-211589167
2	CEBPB	chr1:211589066-211589316	A549	lung:	n/a	chr1:211589153-211589164
3	CEBPB	chr1:211589018-211589339	Hela-S3	cervix:	n/a	chr1:211589153-211589164
4	FOS	chr1:211589105-211589305	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr1:211589110-211589541	MCF10A-Er-Src	breast:	n/a	n/a
6	SPI1	chr1:211588802-211589176	HL-60	blood:	n/a	n/a
7	CEBPB	chr1:211589119-211589336	HepG2	liver:	n/a	chr1:211589153-211589164

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:211589139-211589189	BJ	skin:	n/a
2	chr1:211589139-211589189	HPAEpiC	pulmonary alveolar:	n/a
3	chr1:211589139-211589189	HNPCEpiC	eye:	n/a
4	chr1:211589139-211589189	NH-A	brain:	n/a
5	chr1:211589139-211589189	RPTEC	kidney:	n/a
6	chr1:211589139-211589189	AG04449	skin:	fetal
7	chr1:211589139-211589189	NB4	blood:	n/a
8	chr1:211589139-211589189	AG09309	skin:	n/a
9	chr1:211589139-211589189	SK-N-MC	brain:	n/a
10	chr1:211589139-211589189	Hela-S3	cervix:	n/a
11	chr1:211589139-211589189	SK-N-SH	brain:	n/a
12	chr1:211589139-211589189	PrEC	prostate:	n/a
13	chr1:211589139-211589189	NT2-D1	testis:	n/a
14	chr1:211589139-211589189	AG10803	skin:	n/a
15	chr1:211589139-211589189	BE2_C	brain:	n/a
16	chr1:211589139-211589189	AoSMC	blood vessel:	n/a
17	chr1:211589139-211589189	GM12878	blood:	n/a
18	chr1:211589139-211589189	Caco-2	colon:	n/a
19	chr1:211589139-211589189	NHDF-neo	bronchial:	n/a
20	chr1:211589139-211589189	U87	brain:	n/a
21	chr1:211589139-211589189	ovcar-3	ovarian:	n/a
22	chr1:211589139-211589189	NHBE	bronchial:	n/a
23	chr1:211589139-211589189	HCF	heart:	n/a
24	chr1:211589139-211589189	HIPEpiC	eye:	n/a
25	chr1:211589139-211589189	CMK	blood:	n/a
26	chr1:211589139-211589189	HRPEpiC	eye:	n/a
27	chr1:211589139-211589189	HUVEC	blood vessel:	n/a
28	chr1:211589139-211589189	AG09319	gingival:	n/a
29	chr1:211589139-211589189	GM12892	blood:	n/a
30	chr1:211589139-211589189	SAEC	small airway:	n/a
31	chr1:211589139-211589189	ProgFib	skin:	n/a
32	chr1:211589139-211589189	GM06990	blood:	n/a
33	chr1:211589139-211589189	IMR90	lung:	fetal
34	chr1:211589139-211589189	ECC-1	luminal epithelium:	n/a
35	chr1:211589139-211589189	HepG2	liver:	n/a
36	chr1:211589139-211589189	H1-hESC	embryonic stem cell:	embryo
37	chr1:211589139-211589189	GM19239	blood:	n/a
38	chr1:211589139-211589189	HEK293	kidney:	embryo
39	chr1:211589139-211589189	MCF10A-Er-Src	breast:	n/a
40	chr1:211589139-211589189	T-47D	breast:	n/a
41	chr1:211589139-211589189	LNCaP	prostate:	n/a
42	chr1:211589139-211589189	HRCEpiC	kidney:	n/a
43	chr1:211589139-211589189	HEEpiC	esophagus:	n/a
44	chr1:211589139-211589189	HCT-116	colon:	n/a
45	chr1:211589139-211589189	HCM	heart:	n/a
46	chr1:211589139-211589189	HRE	kidney:	n/a
47	chr1:211589139-211589189	HMEC	breast:	n/a
48	chr1:211589139-211589189	K562	blood:	n/a
49	chr1:211589139-211589189	PFSK-1	brain:	n/a
50	chr1:211589139-211589189	MCF-7	breast:	n/a

No data

Variant related genes	Relation type
SNX25P1	TF binding region
SNX25P1	CpG island

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762141	chr1:211538685-211603843	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
2	esv1824154	chr1:211565640-211614280	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
3	esv3362349	chr1:211588754-211591702	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3433824	chr1:211589079-211591127	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211556800-211589800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211573800-211589600	Weak transcription	Ovary	ovary
3	chr1:211574000-211589600	Weak transcription	Liver	Liver
4	chr1:211580400-211589600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:211581400-211608200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:211581800-211589600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:211581800-211589600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:211581800-211589600	Weak transcription	Gastric	stomach
9	chr1:211581800-211590600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:211585000-211589400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:211585400-211593200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:211587000-211589400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:211587400-211589400	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:211588000-211589200	Weak transcription	Fetal Kidney	kidney
15	chr1:211588800-211589200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:211588800-211589400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:211589000-211589200	Enhancers	HepG2	liver

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